RetrogeneDB ID: | retro_ogar_2978 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873692.1:2296826..2297523(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ERICH1 | ||
| Ensembl ID: | ENSOGAG00000013900 | ||
| Aliases: | None | ||
| Description: | glutamate-rich 1 [Source:HGNC Symbol;Acc:27234] |
Retrocopy-Parental alignment summary:
>retro_ogar_2978
GTGTTTGTTGAGAAGGTGCTGCAGAAACTATTTCCTAGCGTTTCATGTGGCCAAGAAAAGAGGAAGCTCAAGGCCCCAAC
TGTCAGCAGTCCACCCAGAACGTGATCTGTGAGAGTATGAGAGCTGAGCATGTCCAGCCCCGACAGACGGTGACACTAAG
GTCCAGTCTGAGAGGCGGCGCTAAACAAATCTGCCTCCAGAGGGTATGCTCTGTGCCAGAGCACACCACAGCCAGCAATC
CTGAGAACGTTTCCGGCGGTGAGAGCTCAGAAGATCAGGAACTTCATGATCAGCCAAAGAGAAGAATTAGAAAGTGTAAA
TTAAAGAATCCCAAGAGTACTTATGTGGAACAAGCACAGTTAGAGAAATAGCAGTGTCTTTTACAAGAAAAATTATGGCC
ACAGCACACAGATGGCCCCACAATCAGTAAAAATAAAAAAAGGAAAGTGAAAAAGGAACAGCAGATTAAAAGGAAGAAAG
CAGCCGGCTTAGCGGCTTCGCCTCTTTCGTCAGTTTTATGTACCAGCTGGAGGAGAGCAGCAGTGACCGGGAAGGAGCAG
GAGACGTGGAAGGGCAGGTCCCCCCAGAGGCCCAGGACTTTCCCACCATGGATGCCAGGGAGCCGGACTCCACTGGGGCC
AGTGAGGAGGACGCCACAGACGCCAGCGAGGAAGATGTCAGAATTACCTGTGAAAAG
ORF - retro_ogar_2978 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 69.55 % |
| Parental protein coverage: | 54.44 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | VFVEKVLQKLFPSVPRVQEKKELQAPAVNNPPK-NVISESMRAEHVQPL-TDGDTKAQSGRRLYTVSLPP |
| VFVEKVLQKLFPSV...QEK..L.AP.V..PP..NVI.ESMRAEHVQP..TDGDTK.QS.RR..T..LPP | |
| Retrocopy | VFVEKVLQKLFPSVSCGQEKRKLKAPTVSSPPR<NVICESMRAEHVQPR<TDGDTKVQSERRR*T-NLPP |
| Parental | EGYVPSVPEPHHGQ-HPENISSSESSEADQDLHDLPKRRRIRKRKSKKNPKSTYIEQAQLEKHQCLLREE |
| EG........HH.Q..PEN.S..ESSE.DQ.LHD.PK.RRIRK.K..KNPKSTY.EQAQLEK.QCLL.E. | |
| Retrocopy | EGML--CARAHHSQ>NPENVSGGESSE-DQELHDQPK-RRIRKCK-LKNPKSTYVEQAQLEK*QCLLQEK |
| Parental | LQPQHTDGPTISKNKKRKLKKKQQIKRKKAAGLAAK-ASGVSFMYQPEESSSDREGAGDVEGQVAPEAQD |
| L.PQHTDGPTIS.................AAGLAA..AS.VSFMYQ.EESSSDREGAGDVEGQV.PEAQD | |
| Retrocopy | LWPQHTDGPTISXXXXXXXXXXXXXXXXXAAGLAAS<ASFVSFMYQLEESSSDREGAGDVEGQVPPEAQD |
| Parental | FPTMDAKEPDSTGASEEDATDASEEDIQKPGEK |
| FPTMDA.EPDSTGASEEDATDASEED.....EK | |
| Retrocopy | FPTMDAREPDSTGASEEDATDASEEDVRITCEK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2978 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000013900 | 1 retrocopy |
retro_ogar_2978 ,
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