RetrogeneDB ID: retro_ogar_283

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873676.1:3884232..3884976(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000000324
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000030354
• Aliases: None
• Description: None

Sequence

>retro_ogar_283
ATGGGGAAGCGGGATAATCGGGTGGCCTATATGAATCCTATAGCAATGGCTAGATGGAGAGGCCCAACTCAATCTGCAGG
CCCAACAATCCAAGATTATCTGAACCGACCAAGGCCTACCTGGGAAGAAGTGAAGAAACAGTTAGAAAATAAAAAGAAAG
GCTCTAAGGCATTAGCTGAATTTGAAGAAAAAATGAATGAGAATTGGAAGAAAGAACTTGAAAAAAGCAGAGAAAAATTA
TTAAGTGGAAATGAAAGCTCATCCAGAAAAAGAGAAAGAAAGAAAAAGAAAAAGAAGAAATCTTATCAGTTATCATCTTC
TTCATCAAGCTCTGATTCTTCAAGCAGTTCTTCAGATTCTGAGGATGAGGAAAAGAAACAAGGGAAAAAAAGAAAGAAAA
AGAACCACTCACACAAATCATCACAAAGCTCTACATTTGAGTCAGAATCAGAGAGCAAGGAATCTGTAAAAAAAAAAAGG
AAGTCAAAGGATGAAACAGAGAAAGAAAAGTATACTAGAACCCTCAGCAAAAAAAGAAAGAAAACTTATCCTGAGGATAA
ACCTTTATCATGTGAGTCCTCATCAGAGTCAGATTATGAAGAGGAAGTGCAAGCAAAAAAGAAGAGAAGGCATGAAGAAC
AAGGAAAAACAATGGATAAAGTGAAGAAGAAGAAGAAGAAACAGAACAAGAAACACAGTAAGAAGAAGAAAAAGAAGTCC
TCTTCTAGTCATAAGTCAGGATAA

Alignment

ORF - retro_ogar_283 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.06 %
• Parental protein coverage: 82.97 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LQRSEENKKKGSKALAEFEEKMNENWKKELEKSRERLLSGNESSS----RKRKRKRKNL-IGSSSSSSDS
          .....ENKKKGSKALAEFEEKMNENWKKELEKSRE.LLSGNESSS....RK.K.K.K.....SSSSSSDS
Retrocopy VKKQLENKKKGSKALAEFEEKMNENWKKELEKSREKLLSGNESSSRKRERKKKKKKKSYQLSSSSSSSDS

Parental  SSSSSDSEDKE----KKREEKENNNRSHKS----SQSSASESKSERRNCKKERKSKDETE---KEKKKTY
          SSSSSDSED.E....KKR..K.....S..S....S.S...ES....R..K.E......T....K..KKTY
Retrocopy SSSSSDSEDEEKKQGKKRKKKNHSHKSSQSSTFESESESKESVKKKRKSKDETEKEKYTRTLSKKRKKTY

Parental  PGDKPLSSESSSESDYEEEVKAKKEEKEEERRKKKEKNYDLIKKRKKK--KKHSKKKKIKSASSHKSG
          P.DKPLS.ESSSESDYEEEV.AKK....EE..K...K.....KK.KKK..KKHSKKKK.KS.SSHKSG
Retrocopy PEDKPLSCESSSESDYEEEVQAKKKRRHEEQGKTMDK----VKKKKKKQNKKHSKKKKKKSSSSHKSG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_283 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000030354	1 retrocopy	retro_ogar_283 ,