RetrogeneDB ID: retro_ogar_281

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873528.1:33561818..33564209(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000033348
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000017230
• Aliases: None
• Description: None

Sequence

>retro_ogar_281
ATGAATTACCCGGGCGGCGGCGCCTGGGATCTGGGCTCTAATGCTGGGCCCGCGTTTGGCGGCGGCGTCTGCTGCTTGGA
GCACCTGCCCGGCGGGGACCCGAACGACGGCGACGTGCAGCTGGCCCTGCTGCTCGGGGAGCCGGGGCTGCCCTTGGCTC
CGGGCACCGAGGACCACGACCCCCGCCTGGCGCTGGACCCCTGCCTCAGTGACGAGAACTATGACTTCAGCTCTGCCGAG
TCGGGCTCCTCGCTGCGCTACTACAGCGAGGGTGAGAGCGGCGGTAGAGGGAGTTCCTTGTCGTTGCACCCGCGACAGCA
GCCGCCGCTGGTCGCGATGAACTCCAGGGGTGGCGGGGCGGACGGAGGGGGCCCCGGGGAGAGGAAGCGGCCTTGGCCGG
GCGGCCCGACCGCCCGCCACCGTTACGAGGTGGTGACGGAGCTGGGACCGGAGGAGGTGCGATGGTTCTACAAAGAGGAC
AAGAAGACCTGGAAGCCCTTCATCGGCTACGACTCGCTCCGCATCGAGCTCGCCTTCCAGACACTGCTGCAGGCTACGGG
GGCCCGGCCCCAGGCCAAGACCCGGGACAACGACCATGAGTGCGGCACGGCCTCCCCCACGGGCCCGGCCTCCAGCTCCG
GGGAGGAGGACGACGAGGACCGAGCCTGCGGTTTCTGCCCGCGCACGGCGGGGCACGAGCCCGAGATGGTGGAGCTGGTG
AATATCGAGCCCGTGTGCGTGCTGGGCGGCCTCTACCAGGTGGATGTGACCCAGGGAGAGTGCTATCCTGTGTACTGGAA
CCAGGCTGATAAAATACCAGTAATGCGCGGACAGTGGTTTATTGATGGTACTTGGCAGCCTCTGGAAGAAGAAGAAAGTA
ATTTAATTGAGCAAGAACATCTCAGTCGTTTTAGGGGTCGGCAGATGGAGGAAAATTTTGATATTGAAGTGTCAAAATCC
ATAGATGGAAAAAATGCTATTCATAGTTTCAAGCTGAGCCGAAACCACGTGGACTGGCACAGTATGGATGAAGTATATCT
TTACAGCGATGCAACAACGTCTAAAATCGCGAGAACGGTCACCCAGAAACTGGGGTTCTCGAAAGCGTCAAGTACTGGGA
CGCGGCTGCACAGAGGCTACGTGGAAGAAGCCACCCTGGAGGACAAGCCGTCCCAGGCGACCCATATTGTGTTTGTCGTG
CATGGCATTGGGCAGAAAATGGACCAAGGGAGAATTATCAAGAACACAGACATGATGAGGGATGCTGCAAGAAAGATAGA
AGAACAACGGCATTTTTCTAACCAGGCAACACATGTTGAATTTCTCCCGGTTGAGTGGCGGTCAAAACTAACTCTTGATG
GAGACACTGTGGATTCCATCACTCCCGACAAAGTGCGGAGCTTACGGGACATGCTGAACAGCGGTGCCATGGACATAATG
TATTATACCAGCCCACTCTACAGAGATGAGCTAGTTAAAGGCCTTCAGCAAGAGCTGAACCGATTATATTCCCTTTTCTG
TTCTCGGAATCCAAACTTTGAAGAAAACGGGGGTAAAGTCTCAATTGTGTCCCACTCCTTGGGCTGTGTGATCACGTATG
ACATCATGATGGGCTGGAACCCGGTCAGGCTCTACGAGCAGCTGCTGCGGAGGGAGGACGAGCTGCCTGACGAGGGCCGG
CTGAGCAGCGAGGAGCGCCACCTGCTGGGCGAGCTCTTCCTGACCCGGAGGCGGCTGAGGGAGATAGAAGAACAGCTGCG
TGAGCTGAAGACGTCTGTGACACAAGCACCTGCCTTAAAATTTAAGGTTGAGAACTTCTTCTGCATGGGGTCCCCACTGG
CGGTTTTCTTGGCATTGCGTGGCATCCGCCCTGGAAACACAGGAAGTCAGGACCATATTTTACCTAGAGAGATTTGTAAC
CGGCTACTAAATATTTTTCATCCTACAGACCCAGTGGCTTATAGATTAGAACCTTTAATACTGAAACACTACAGCAACAT
TGCACCCGTCCAGATCCACTGGTACAATACTTCGAATCCTCGACCTTACGAACATATGAAGCCAAGCTTTCTCAACCCGG
TAAAAGAACCTACCCCAGTTTCAGAGAATGACAGTGTTGCTACCATATCTAGCCCCCGGACCTCGCCTGTCCCGTCCCGC
CGGCACTCCGGAGAGTCCATTACGAATATCGGCAAAGCGAGCATCCCGGTGGAGCTGGATCACAGGATCGACTTTGAGCT
CCGAGAGGGCCTCGTGGAGAGCCGCTACTGGTCAGCCGTCACGTCGCACACTGCCTACTGGTCGTCCTTGGATGTGGCCC
TCTTTCTTTTAACCTTCATGTACAAACATGAGCACGATAATGACACAAAACCCAATTTAGATCCAATCTGA

Alignment

ORF - retro_ogar_281 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.87 %
• Parental protein coverage: 83.87 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NARGGGAWELGSDAGPAFGGGVCCFEHLPGGDPGDGDVQLALLRGEPGLHLAPGTEDHDPRLALDSCLSD
          N..GGGAW.LGS.AGPAFGGGVCC.EHLPGGDP.DGDVQLALL.GEPGL.LAPGTEDHDPRLALD.CLSD
Retrocopy NYPGGGAWDLGSNAGPAFGGGVCCLEHLPGGDPNDGDVQLALLLGEPGLPLAPGTEDHDPRLALDPCLSD

Parental  ENYDFSSAESGSSLRYYSEGESGGGGSSLSLHPPQQPPLVATNSGGGGAAGGGPGERKRPRPGGPAARHR
          ENYDFSSAESGSSLRYYSEGESGG.GSSLSLHP.QQPPLVA.NS.GGGA.GGGPGERKRP.PGGP.ARHR
Retrocopy ENYDFSSAESGSSLRYYSEGESGGRGSSLSLHPRQQPPLVAMNSRGGGADGGGPGERKRPWPGGPTARHR

Parental  YEVVTELGPEEVRWFYKEDKKTWKPFIGYDSLRIELAFRTLLQATGARPQAKIQDDEHECGTASPAGPAS
          YEVVTELGPEEVRWFYKEDKKTWKPFIGYDSLRIELAF.TLLQATGARPQAK..D..HECGTASP.GPAS
Retrocopy YEVVTELGPEEVRWFYKEDKKTWKPFIGYDSLRIELAFQTLLQATGARPQAKTRDNDHECGTASPTGPAS

Parental  SSGEEDDEDRACGFCPRTAGHEPEMVELVNIEPVCVRGGLYEVDVTQGECYPVYWNQADKIPVMRGQWFI
          SSGEEDDEDRACGFCPRTAGHEPEMVELVNIEPVCV.GGLY.VDVTQGECYPVYWNQADKIPVMRGQWFI
Retrocopy SSGEEDDEDRACGFCPRTAGHEPEMVELVNIEPVCVLGGLYQVDVTQGECYPVYWNQADKIPVMRGQWFI

Parental  DGTWQPLEEEESNLIEQEHLSRFRGQQMEENFDIEVSKSIDGKDAIHSFKLSRNHVDWHSMDEVYLYSDA
          DGTWQPLEEEESNLIEQEHLSRFRG.QMEENFDIEVSKSIDGK.AIHSFKLSRNHVDWHSMDEVYLYSDA
Retrocopy DGTWQPLEEEESNLIEQEHLSRFRGRQMEENFDIEVSKSIDGKNAIHSFKLSRNHVDWHSMDEVYLYSDA

Parental  TTSKIARTVTQKLGFSKASSSGTRLHRGYVEEATLEDKPSQTTHIVFVVHGIGQKMDQGRIIKNTAMMRD
          TTSKIARTVTQKLGFSKASS.GTRLHRGYVEEATLEDKPSQ.THIVFVVHGIGQKMDQGRIIKNT.MMRD
Retrocopy TTSKIARTVTQKLGFSKASSTGTRLHRGYVEEATLEDKPSQATHIVFVVHGIGQKMDQGRIIKNTDMMRD

Parental  AARKIEE-RHFSNHATHVEFLPVEWRSKLTLDGDTVDSITPDKVRGLRDMLNSSAMDIMYYTSPLYRDEL
          AARKIEE.RHFSN.ATHVEFLPVEWRSKLTLDGDTVDSITPDKVR.LRDMLNS.AMDIMYYTSPLYRDEL
Retrocopy AARKIEEQRHFSNQATHVEFLPVEWRSKLTLDGDTVDSITPDKVRSLRDMLNSGAMDIMYYTSPLYRDEL

Parental  VKGLQQELNRLYSLFCSRNPNFEENGGKVSIVSHSLGCVITYDIMMGWNPVRLYEQLLRREDELPDEGWL
          VKGLQQELNRLYSLFCSRNPNFEENGGKVSIVSHSLGCVITYDIMMGWNPVRLYEQLLRREDELPDEG.L
Retrocopy VKGLQQELNRLYSLFCSRNPNFEENGGKVSIVSHSLGCVITYDIMMGWNPVRLYEQLLRREDELPDEGRL

Parental  SSEERHLLGELFLTRRRLREIEEQLRELKASMTQAPALKFKVENFFCMGSPLAVFLALRGIRPGNTGSQD
          SSEERHLLGELFLTRRRLREIEEQLRELK.S.TQAPALKFKVENFFCMGSPLAVFLALRGIRPGNTGSQD
Retrocopy SSEERHLLGELFLTRRRLREIEEQLRELKTSVTQAPALKFKVENFFCMGSPLAVFLALRGIRPGNTGSQD

Parental  HILPREICNRLLNIFHPTDPVAYRLEPLILKHYSNISPVQIHWYNTSNPLPYEHMKPSFLNPIKEPTSVS
          HILPREICNRLLNIFHPTDPVAYRLEPLILKHYSNI.PVQIHWYNTSNP.PYEHMKPSFLNP.KEPT.VS
Retrocopy HILPREICNRLLNIFHPTDPVAYRLEPLILKHYSNIAPVQIHWYNTSNPRPYEHMKPSFLNPVKEPTPVS

Parental  ENDSVTTIPSPVTSPVLSRRHYGESITNIGKASI
          ENDSV.TI.SP.TSPV.SRRH.GESITNIGKASI
Retrocopy ENDSVATISSPRTSPVPSRRHSGESITNIGKASI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_281 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Oryctolagus cuniculus	ENSOCUG00000000326	2 retrocopies	retro_ocun_1757, retro_ocun_600,
Otolemur garnettii	ENSOGAG00000017230	1 retrocopy	retro_ogar_281 ,