RetrogeneDB ID: retro_ogar_2799

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873665.1:3269870..3270055(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C4orf48
• Ensembl ID: ENSOGAG00000031277
• Aliases: None
• Description: chromosome 4 open reading frame 48 [Source:HGNC Symbol;Acc:34437]

Sequence

>retro_ogar_2799
GCAGAGCCTGCCACTGGGAGTGAGTACAGTCCCTGCACAAAGCGGCAGGGTATTGACTGCCATGTGTTGGAGTTCATGAA
GCAGCCCTGCAGGACCTGTGGAAGATGGCCGACAGCTTGGATCCAGGCACACAGACCCTCCTGCTACTGGCTGAGCACCT
GGCCATGTGTGCCTGCTGGCCAACT

Alignment

ORF - retro_ogar_2799 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.9 %
• Parental protein coverage: 64.89 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AEPATGSAV-PAQSRPCVDCHAFEFMQR-ALQDLRKTAYSLDARTETLLLQAERRALCACWPT
          AEPATGS...P...R...DCH..EFM...ALQDL.K.A.SLD..T.TLLL.AE..A.CACWPT
Retrocopy AEPATGSEYSPCTKRQGIDCHVLEFMKQ<ALQDLWKMADSLDPGTQTLLLLAEHLAMCACWPT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2799 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000031277	1 retrocopy	retro_ogar_2799 ,
Tursiops truncatus	ENSTTRG00000013728	1 retrocopy	retro_ttru_1944,