RetrogeneDB ID: retro_ogar_2792

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873665.1:83267..84680(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANKRD13A
• Ensembl ID: ENSOGAG00000012287
• Aliases: None
• Description: ankyrin repeat domain 13A [Source:HGNC Symbol;Acc:21268]

Sequence

>retro_ogar_2792
GAGGTTCCAGATTTCTATGTGCAGATGGAATGGGAATTCACCAGCTGGGCGCTGTTGGTTCCCAGAATATGCCCAGATGA
TGTCTGTCGCATTTGGAAAAGCAGTGCCAAACTGCCGGTCGGTACCACATGGCTGAGATTTGAAAATAGGACCTGGATAA
GTGGGAGGTGTAGTTTTATATTTAAGAGAGAAGACAACTGGATGGAGTTGATGGACGTCAACCACAATGACAAAGTGGTG
ACTACCAAACACTCTGACCTTTCCCAAGAAATGGAACACTTCACTCTGTACTTAGGAAGCCATAAAGCAGGGACGCTGAG
CAGTGGCTCAAAGCCCAGTGATAACACCAGCCTCTATACTAAAATGTTGCTTCTCAAAGAGCTAAATCCAGATTCTGGGG
CTAGAGGACAGACAAAGCTGAAGCTGTTAATGGTTCAGAAGCAAAAGTATACACCATAAACAACGTGAATGTGATAACCA
AAATACTCATAGAACATCTGACCGAGGAGGAAAAAAGAGAAATAAAGCTGACAAGAACCCACTGGAATCTTTGCTGGGAA
CTGGGGAACACCAGTTTGGTGCCCAAGGCACCTTACTACGGAATATGCCACTGCAAACAACCCCACAGCTATCACACCTG
ATGAGTACTTCAACACAGAGTTTGATCTGAAAGACAGGGACATTGGAAGGCCAAAAGAGCTGACAATTAGAACACAGAAG
TTTAAAGAAGCACTGTGGATGTGTGAAGAATTTCCGCTCTCTCCTGTGGACCAGGTCATTCCCATCATGGACCTAATGGC
TTGAACTAATGCTCATTTTGCAAGATTGAGAGATTTCATCAAATTAGAACTCCCAGCTGGATTTCCTGTCAAAATAGAAA
TTCCTTTGTTTCATGTCTTAAATGCATGGATTACATTCGGGAATGTTAATGGCTATAGCACTGCAGAAGAAACTGTATCT
CAAAATGTGGATGGGGCACAGGCCAATTCAGCTTCCCACATCACAAACTTTGAGGTCAATCAGTCTGTTTTTCAAATTCT
TGAATCTTACCACATTCATGACAATGGCAGAAATGTGCATTTGCAAAATGAAGATTATGAGATAATGCAGTTTGCCATCT
AGGAGAGCCTGCTACAGTCCAGAAGGAGCCAAGAACTTCTATGACCAGCTTCAAAGGGCGGGATCAACCAGACACATGCC
TATGATGACAGGTTTGAGAGGGCCATCCAGGAGAGCCTCCTCACCAGCACTGAAGGCCCATGCTCTGGTGTCCCAACTGA
CATGAGCAGTCTTGATAGTGATTTGCAGCTGGCCATGGAGCTCTCTGCCAAATAGCTGGAAGAACAGGAGCCCTGACTCT
AAAAGGAAGAGGCTGAGCTCCAGCAACTCTTATAGCTGTCACTCACTGACAAA

Alignment

ORF - retro_ogar_2792 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.0 %
• Parental protein coverage: 80.37 %
• Number of stop codons detected: 9
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  EAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSFIFKGEVTDNWA
          E.PDFYVQM.WEFTSW..LV.RICP.DVCRIWKS.AKL.V..T.L.FEN..WI.GR.SFIFK.E..DNW.
Retrocopy EVPDFYVQMEWEFTSWALLVPRICPDDVCRIWKSSAKLPVGTTWLRFENRTWISGRCSFIFKRE--DNWM

Parental  ELMEVNHDDKVVTTEHFDLSQEMERLTLDL-MKPKSREVERRLT-SPVI-NTSLDTK-NIAFERTKSGFW
          ELM.VNH.DKVVTT.H.DLSQEME..TL.L..KP.SR..E..L..SPVI.NTSL.TK.N.A..R.KS.FW
Retrocopy ELMDVNHNDKVVTTKHSDLSQEMEHFTLYL<RKP*SRDAEQWLK<SPVI<NTSLYTK<NVASQRAKSRFW

Parental  GWRTDKAEVVNGYEAKVYTVNNVNVITKIRTEHLTEEEK-KRYKADRNPLESLLGTVEHQFGAQGDL-TT
          G.RTDKAE.VNG.EAKVYT.NNVNVITKI..EHLTEEEK.KR.KAD.NPLESLLGT.EHQFGAQG.L.TT
Retrocopy G*RTDKAEAVNGSEAKVYTINNVNVITKILIEHLTEEEK<KRNKADKNPLESLLGTGEHQFGAQGTL<TT

Parental  ECATANNPTAITPDEYFNEEFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTS
          E.ATANNPTAITPDEYFN.EFDLKDRDIGRPKELTIRTQKFK..LWMCEEFPLS.V.QVIPI.DLMA.T.
Retrocopy EYATANNPTAITPDEYFNTEFDLKDRDIGRPKELTIRTQKFKEALWMCEEFPLSPVDQVIPIMDLMA*TN

Parental  AHFARLRDFIKLEFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEETVSQNVDGAQANSASHVTNFEVD
          AHFARLRDFIKLE.P.GFPVKIEIPLFHVLNA.ITFGNVNG.STAEETVSQNVDGAQANSASH.TNFEV.
Retrocopy AHFARLRDFIKLELPAGFPVKIEIPLFHVLNAWITFGNVNGYSTAEETVSQNVDGAQANSASHITNFEVN

Parental  QSVFEIPESYHIQDNGRNVHLQDEDYEIMQFAIQQSLLESNRSQELLGPASNGGISQTHAYEDQFESFQP
          QSVF.I.ESYHI.DNGRNVHLQ.EDYEIMQFAI..SLL.S.RSQELL.PAS.GGI.QTHAY.D.FE....
Retrocopy QSVFQILESYHIHDNGRNVHLQNEDYEIMQFAI*ESLLQSRRSQELL*PASKGGINQTHAYDDRFE----

Parental  RAIQESLLTSTEGPCSGAPTDMSSFDSDLQLAMELSAKELEEQELRLQEEEAELQQVLQLSLTDK
          RAIQESLLTSTEGPCSG.PTDMSS.DSDLQLAMELSAK.LEEQE..L..EEAELQQ.L.LSLTDK
Retrocopy RAIQESLLTSTEGPCSGVPTDMSSLDSDLQLAMELSAK*LEEQEP*L*KEEAELQQLL*LSLTDK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2792 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000012287	1 retrocopy	retro_ogar_2792 ,
Rattus norvegicus	ENSRNOG00000001204	1 retrocopy	retro_rnor_986,