RetrogeneDB ID: retro_ogar_2755

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873661.1:2674067..2674655(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ELAVL2
• Ensembl ID: ENSOGAG00000016228
• Aliases: None
• Description: ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) [Source:HGNC Symbol;Acc:3313]

Sequence

>retro_ogar_2755
CAGCAGGTAATTGCTGCCATGGAAACACAACTGTCTAATGGGCCAACTTGCAATAACACAGCCAATGGTCCAACCACCAT
AAACAACAACTGCTCATCACCAGTTGACTCTGGGAATACAGAGGACAGCAAGACCAACTTAATAGTCAACTATCTTCCTC
AGAACATGACACAGGAAGAGCTAAAGAGTCTTTTTGGGAGCATTGGTGAGATAGAGTCCTGTAAGCTTGTAAGAGACAAA
ATAACAGGGCAGAGCTTGGGATATGGTTTTGTGAACTACATCGACCCCAAGGATGCAGAGAAAGCTATCAACACTCTGAA
TGGATTGAGACTTCAAACCAAAACAATAAAAGTTTCCTATGCTCGCCCAAGTTCAGCTTCTATCAGAGATGCAAATTTGT
ATGTCAGTGGACTTCCAAAAACAATGACCCAGAAGGAGTTAGAACAGCTTTTTTCACAATATGGACGCATTATTACTTCA
CGTATTCTTGTTGACCAAGTCACTGGCATATCAAGGGGTGTAGGGTTTATTCGATTTGACAAGCGGCTTGAGGCAGAAGA
AGCTATCAAAGGCCTAAATGGCCAGAAA

Alignment

ORF - retro_ogar_2755 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.98 %
• Parental protein coverage: 59.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE
          .QVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE
Retrocopy QQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE

Parental  IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK
          IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK
Retrocopy IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPK

Parental  TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK
          TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR.EAEEAIKGLNGQK
Retrocopy TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRLEAEEAIKGLNGQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2755 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000004067	1 retrocopy	retro_ogar_71,
Otolemur garnettii	ENSOGAG00000016228	1 retrocopy	retro_ogar_2755 ,