RetrogeneDB ID: retro_ogar_2748

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873659.1:3517275..3517828(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: THG1L
• Ensembl ID: ENSOGAG00000009057
• Aliases: None
• Description: tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) [Source:HGNC Symbol;Acc:26053]

Sequence

>retro_ogar_2748
GCTTCCTGCAACATTGAGGTTCGTGATTGCTTGGTTGCAGTTTCCGTCACTCTGAGATGGTGCGTAAGGCTGGGGGCGAC
CATGGCAAAAAGCAAATTCGAGTATGTCAGGGACTTTGAAGTTGACGACACCTGCTTGGCCCACTGCTGGGTGGTAGTGC
GGCTGGAGGGCAGGAATTTCCATCGGTTTGCTGAGAAGCACCACTTTGCAAAACCTAATGACAGTCGTGCTCTCCATCTG
ATGACCAAATGTGCCCAGACCGTAATGGAAGAACTAGAGGATATTGTGATTTGCATATGGACAGAGTGATGAGTACAGCT
TTGTGTTCAAGCAGAAAAGCAATTGGTTTAAAAGAAGAGCTAGTAAGTTCATGACTCATGTCGCATCTCAGTTCGCCTCC
AGCTATGTGTTTTATTGGCGGGATTACTTTAAGCACCAGCACCTTCTATATCCCCCAGGCTTTGATGGAAGAGTTGTGAT
GTATCCCAGCAACCAGGTCTTAAGGGACTATCTCAACTGGCGGCAAACAGATTGTCACATCAATAATCTTTAT

Alignment

ORF - retro_ogar_2748 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.05 %
• Parental protein coverage: 61.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ASCNVEVRDCLAAVSVTLRWCVRLGATMAKSKFEYVRDFEADDTCLAHCWVVVRLDGRNFHRFAEKHHFA
          ASCN.EVRDCL.AVSVTLRWCVRLGATMAKSKFEYVRDFE.DDTCLAHCWVVVRL.GRNFHRFAEKHHFA
Retrocopy ASCNIEVRDCLVAVSVTLRWCVRLGATMAKSKFEYVRDFEVDDTCLAHCWVVVRLEGRNFHRFAEKHHFA

Parental  KPNDSRALHLMTKCAQTVMEELEDIVI-AYGQSDEYSFVFKRKSNWFKRRASKFMTHVASQFASSYVFYW
          KPNDSRALHLMTKCAQTVMEELEDIVI.AYGQSDEYSFVFK.KSNWFKRRASKFMTHVASQFASSYVFYW
Retrocopy KPNDSRALHLMTKCAQTVMEELEDIVI>AYGQSDEYSFVFKQKSNWFKRRASKFMTHVASQFASSYVFYW

Parental  RDYFKDQHLLYPPGFDGRVVVYPSNQILRDYLSWRQADCHINNLY
          RDYFK.QHLLYPPGFDGRVV.YPSNQ.LRDYL.WRQ.DCHINNLY
Retrocopy RDYFKHQHLLYPPGFDGRVVMYPSNQVLRDYLNWRQTDCHINNLY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2748 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000009057	1 retrocopy	retro_ogar_2748 ,