RetrogeneDB ID: retro_ogar_2721

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873654.1:4203938..4204311(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016865
• Aliases: None
• Description: None

Sequence

>retro_ogar_2721
GGGTGTGATGTCCAAGATGGGGACCTCAGGGGGCCCCACAGAGCTACCAATGAGGGTGATGTTGACCAGCTGCAGGAGCT
CATCTCCTTGAAGAGAAATGAGTTCAATTCAAGAGACAAGAAGAGGAGGGAGTGCCCGGCATTTGGCCTGTGCCAAAGGC
TATTACAGGGTGTCTCTTTCTTGGATGACAAGAACTGTGACCTGAACATCCGAGATGGTGAAGATGCCTTCACACCTCTG
ATGAAGGCTGAGTGATACGAGGAAGAGCGGTGCACCACGACCCTCCAGGATGTGGCACTGATCCCGGTCTCACTGACATC
CACGGGAACTTGCTGTACTCTGCGCTGCCCACAGTAGCAGTATAGACGTGGCA

Alignment

ORF - retro_ogar_2721 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.94 %
• Parental protein coverage: 52.99 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  GYDVHNADLKSLHRAVYEGDISIIHDLIELKRNKLNSYDKKNR-SPLHLACVKGYARVA-TMLIDKRCDL
          G.DV...DL...HRA..EGD......LI.LKRN..NS.DKK.R.S..HLAC.KGY.RV....L.DK.CDL
Retrocopy GCDVQDGDLRGPHRATNEGDVDQLQELISLKRNEFNSRDKKRR>SARHLACAKGYYRVS<SFLDDKNCDL

Parental  NIRDAEQR-TPLIKAVQCEKLECVTLLLE-RGADPNIVDIHGN-CALHYAAHSGNVEIA
          NIRD.E...TPL.KA...E...C.T.L....G.DP...DIHGN..A...AAHS.....A
Retrocopy NIRDGEDAFTPLMKAE*YEEERCTTTLQD<CGTDPGLTDIHGN<LAVLCAAHSSSIDVA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2721 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000016865	1 retrocopy	retro_ogar_2721 ,
Tupaia belangeri	ENSTBEG00000017150	1 retrocopy	retro_tbel_490,