RetrogeneDB ID: retro_ogar_252

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873551.1:402918..404043(-)
• Located in intron of: ENSOGAG00000001987

Retrocopy information

• Ensembl ID: ENSOGAG00000026131
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000014249
• Aliases: None
• Description: None

Sequence

>retro_ogar_252
GGGCTTTTGCAGGAATCAGTGACATTCCAGGATGTGGCCATGGACTTCACCCTGGAGGAGTGGCAGCTGCTTGATTGTGC
CAAGAGAACCCTGTATTGGGATGTTATGTTGGAGAACTATAGAAACCTCATTTCAGTGGGATGTCCAGTTACCAAAACCA
AAGTAATCTTCAAAGTGGAGCAAGGGCAAGAGCCTTGGAGGGCGGAGAGAGGGAAGCCACACTGGAGCCATCCAGAAGCT
GACTACCTACTTGTTGATGAACCAGAGAAGCATAAGGAAAGTAAAGATAATTTTTTGACATCAGCTTTTTTCACATTCAA
TGAAATTCTGACTATGGAGAGAATTCACTGTTATAATGTGAGAACAAGTCTTAATCCTACAAGATGTAAATCATACGGGA
AGAGTTTGCAACCTAATGTAGACTTTCTTAATTATAATGAAAGTTATAGTGAAGAAAACTCTTATGAATGCTGTGAATGT
GGAAAGGGCTTCAGAAAGAAGTTTCATTTCATTAGACATGAAAAAAATCATACAAGAAAAAAGCCTTTTGAATGCAATGA
CTGTGGGAAAGCCTATAGCAGGAAGGTAAACCTTGCTACTCATCAGAAGATTCATAATGGAGAGAGACCCTTTGTATGCA
ATGATTGTGGGAAAGTTTTTATGCATAAAGCTCAACTTGTGGTCCACCAGAGACTTCACACTGGAGAGAAACCTTATGAA
TACAATCAGTGTAGGAAAACATTCACTTGGAACTCCTCCTTTAATCAGCATGTGAAATCTCATACACTTGAGAACTCATT
TGAATGTAAGGAATGTGGGAAAACCTTCAGATATAGTTCATCCCTTCATAAACATTCTAGGTTTCATACAGGAGAGAAAC
CTTATCAATGTATTGTATGTGGGAAAGCCTTTGGAAACACATCTGTGCTTGTTACACATCAAAGAATCCACACAGGAGAG
AAACCTTATGGATGTATTCAATGTGGCAAAGCCTTTGTCAAGAAGTCTCATCTCCTTAGACATCAGATAACACACACAGG
AGAGAAGCCCTATGAATGTAACAGATGTGGGAAAGCATTTTCCCAGAAGTCAAATCTCATTGTACATCAGAAAATTCATA
TGTAA

Alignment

ORF - retro_ogar_252 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.77 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LQESVTFQDVAVDFTLEEWQLLDCAKRTLYWDVMLENYRNLISVGCPVTKTKVIFKVEQGQEPWRAERGK
          LQESVTFQDVA.DFTLEEWQLLDCAKRTLYWDVMLENYRNLISVGCPVTKTKVIFKVEQGQEPWRAERGK
Retrocopy LQESVTFQDVAMDFTLEEWQLLDCAKRTLYWDVMLENYRNLISVGCPVTKTKVIFKVEQGQEPWRAERGK

Parental  PHWSHPEADYLLVDEPEKHQESKDNFLTSAFFTFNKILTMERIHCYNVRTSLNPTRSKSYGKSLQPNVDF
          PHWSHPEADYLLVDEPEKH.ESKDNFLTSAFFTFN.ILTMERIHCYNVRTSLNPTR.KSYGKSLQPNVDF
Retrocopy PHWSHPEADYLLVDEPEKHKESKDNFLTSAFFTFNEILTMERIHCYNVRTSLNPTRCKSYGKSLQPNVDF

Parental  LNYNESYSEENSYECCECGKAFRKKFHFIRHEKYHTRKKPFECNDCGKAYSRKANLATHQKIHNGERPFV
          LNYNESYSEENSYECCECGK.FRKKFHFIRHEK.HTRKKPFECNDCGKAYSRK.NLATHQKIHNGERPFV
Retrocopy LNYNESYSEENSYECCECGKGFRKKFHFIRHEKNHTRKKPFECNDCGKAYSRKVNLATHQKIHNGERPFV

Parental  CNDCGKAFMHKAQLVVHQRLHTGEKPYECSQCGKTFTWNSSFNQHVKSHTLENSFECKECGKTFRYSSSL
          CNDCGK.FMHKAQLVVHQRLHTGEKPYE..QC.KTFTWNSSFNQHVKSHTLENSFECKECGKTFRYSSSL
Retrocopy CNDCGKVFMHKAQLVVHQRLHTGEKPYEYNQCRKTFTWNSSFNQHVKSHTLENSFECKECGKTFRYSSSL

Parental  HKHSRFHTGEKPYQCIVCGKAFGNTSVLVTHQRIHTGEKPYGCIQCGKAFVKKSHLLRHQITHTGEKPYE
          HKHSRFHTGEKPYQCIVCGKAFGNTSVLVTHQRIHTGEKPYGCIQCGKAFVKKSHLLRHQITHTGEKPYE
Retrocopy HKHSRFHTGEKPYQCIVCGKAFGNTSVLVTHQRIHTGEKPYGCIQCGKAFVKKSHLLRHQITHTGEKPYE

Parental  CNRCGKAFSQKSNLTVHQKIHM
          CNRCGKAFSQKSNL.VHQKIHM
Retrocopy CNRCGKAFSQKSNLIVHQKIHM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_252 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000014249	1 retrocopy	retro_ogar_252 ,