RetrogeneDB ID: retro_ogar_216

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873539.1:13414120..13416655(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000028921
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000008747
• Aliases: None
• Description: None

Sequence

>retro_ogar_216
GAAATGTTCTTATGTTATAATGGGGAAGTCCTTGTTTTCCAGTTATCGGAAGGAAATTTTTCGGATAAAGAGACTGCGAA
AACACCCATATTACTTATCAGAAGAATGGTATTTGACAGAGAAACAAGATCATTTGTTCAGAAGTCCACTGGATCCTTCA
GCATTGAGGTAGAAAACTCTCATTTTAAAATTATTTGTTGCAATTGTGTGTCAGATTTCAGAACTGGAATTAACCTCCCT
TGCGTGTTGATACAAAGCAATGAAAAGAACGTTTTCAGGTATTTTCTACTACTTCTCCACAGTACCAATAAATTTGAAAA
GCGTTTGAGCTTTAATATAGGTCATGAGTTGAAGGATGGCTTAAGGGTCCTTGATGGCCCTTTGGTCTTATGGAGACATG
CCGGAACATTCTTCTGTATGTCTTCTGAAACTGGCAAAGCCATTACTCTGTCAGTTAACTTTTCCTCCATTGAATGGATA
GGGGAGATTAAAAATGTGGGTATGATTTTATTGGGAATAAAGGGATGTTATTTCTCTGAGAAAGGACGTACCCAGGAGGC
TTCAGAATCAGATTATGCAGTTTGGAATACCAAGTTTTGTGCATACTCTCTTGAAAGTCAAAAAGTATTAAGTGATACGT
TCATTATCCCTCCTGCTTATAGTAATTTGGTAACTTGCGTGCATGTCTGTGCAAGTGAGATTATCAACGGCCAGTTAAGA
ATATCTCTAATTGCCCTTACTCAAAAGAATCAACTGATTTCCTTCCAAAATGGGACTCCTAAAAGTATATGCCAGCTTCC
ATTTGGAGATCCTTGTGCAGTTCACCTTATGGATTCAGGTGGAGGAAACTTTTATTTCATTGTATCCTTTAGGTCCAATG
ATGCTTGTGCTGTTTGGGAAAAGAACTTTCAGGTTGCTGCTAAATGGGAAAAAATTAGCTTAATTCTGATAGATGACTTT
ATTGGAACTGGAACTGAACAAGTATTGGTACTTTTTAAAGACTCCTTGAATTCAGATTGCCTGACTTCATTTCAAATGAC
AAATTTTGAAAGTATAAACTATTCAAGTGAACCATTGGATTGCACTGAAGATGATTTATTTGAAGACAAACAAGACAATC
GTTATTTGGTGATTCCACCTCTGGAAAGAAGAATAAAAGTTGGTGCAGCTTCTGTTCAGGAATTACAACAACACATCTTG
TTGAAGGATAAAATTATTTTGAAATCTTACAAAGCTTTAATAAACCTGCTTCAAGGGAAAGATGATAATACATCAAGTGT
AAGGGAGGAATGTCTTGCTCCCCTTTGTGGTGAAGAAGAAAATTCTGAATATACCTTTGATGAAAAGTTGCCAGACAATT
TTCAAGATTCAAAGCAACTAGTAGAGAAGATCTGGTATCGTGTAATAGATGATAGCTTAGTTGTTGGAGTGAAAACCTCA
TCTTCTTTAGAGCTGTCCCTGAATGATGTGACTTTATCATTATTAATGAATCAAGCCCATGGCTCCAGCTATCACCTTAT
TAAGTGTCAAAATAGGGTGATTAAGTTAAGTATGGATTCTTTGCCAGAACCACACTTGATGCCATACAAAATAGGATCAG
AGGCAAAAAAAATCAAGTTGACCCTTGATAATGAGGAAAAGGAAATCTTTGTTCGTGAACAGTCATCACAACGAGAATAT
GTGCCGATAATTACTGCTATAACATCTCTTTCACCACTTTTAGCACTCAGTAAATTTTGTTGCATTGTGCTGCTACATAT
TATGAAGAGAGAAAATGGTGACTATCCTCAAGATCATTATATTCCGTGTGGCAGACTTTTTGTAAGTCTAGATCTTTCAA
GTGAGAAATGCCTGCTGATGTTTCCAAAGAAGAAACCTGTAGAACACAAGGAGGATCTTTTTGCACTTTTCGCAGTATTC
CACAAATCTTGTTTTCAAATCACATCACCTGGATATGCCCTGAAGGCAATGAAGGCATGGCTGTTAGAATGCATGAATTG
TGAAGTCATCAAAGAATTTCCAGAAGTGTGCTTTTGTAAAAGGCCAGGAAATTTGTATGGGACACTCTTCAAATGGAAAC
AAAGAACACTATTTGAAGGGATTTTAATAATCTATTCCAGGAATCAAACAGTTTTGTTCCAGTGCCTTCATAAGCTCATT
GGTGTTCTCCCTATAAACTGTTTGTTGAGAAATCTAAAATTAGAAAATGAAGATTTCCTAGTTGATTATATGGCATTGTC
TTTGGAGAAGGAACTGGTTATCTTTGGCTCTCTTTCTTCTGCCTTAGCTAAAGTTGATAGCAACTTTATGCAGAGGTGTG
AAGCAAGCAAAGGAGATAGTAGTGTTCTTGCAGATGCTTTACCAGACAGAGAGAAGGAAATTCATTGGTACAGAAAAGAA
GTCCAGAGAGCAAAGAAGAAAATGTTGAGAACAAAGCTAAAAGTGAGTGGTGCCCTTTATAGAGCACTAGCTTTGAAAGT
AGCTGAGGTTCAGTTGAAATCAGACCTCACTGCCCAGAAATTGACCAATTTATAA

Alignment

ORF - retro_ogar_216 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.52 %
• Parental protein coverage: 99.18 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ESFLCYNGEVLVFQLSKGNFSDKETAKTSMLHVRRMVFDRETRSFIQKSTGSFSIKGENSHFKIIYCNCV
          E.FLCYNGEVLVFQLS.GNFSDKETAKT..L..RRMVFDRETRSF.QKSTGSFSI..ENSHFKII.CNCV
Retrocopy EMFLCYNGEVLVFQLSEGNFSDKETAKTPILLIRRMVFDRETRSFVQKSTGSFSIEVENSHFKIICCNCV

Parental  SDFRTGINLPCVLIQSNENKVFRYFLLFLHSTNKFENRLSFKIGHELKDSLRVLDGPLVLWRHARTFFYM
          SDFRTGINLPCVLIQSNE..VFRYFLL.LHSTNKFE.RLSF.IGHELKD.LRVLDGPLVLWRHA.TFF.M
Retrocopy SDFRTGINLPCVLIQSNEKNVFRYFLLLLHSTNKFEKRLSFNIGHELKDGLRVLDGPLVLWRHAGTFFCM

Parental  SSETGKVVTLSVNFSSIVWIGDIENVGMVLLGIKERSLSEEECTQEASESDYIISNTKFCVYSLESEEVL
          SSETGK..TLSVNFSSI.WIG.I.NVGM.LLGIK....SE...TQEASESDY...NTKFC.YSLES..VL
Retrocopy SSETGKAITLSVNFSSIEWIGEIKNVGMILLGIKGCYFSEKGRTQEASESDYAVWNTKFCAYSLESQKVL

Parental  SDTYIIPPAYSSVVTCVHVCAIEIINNQLRMSLIALTQKNQLIYFHNGTPESVCQLPFGDPCAVHLMDLS
          SDT.IIPPAYS..VTCVHVCA.EIIN.QLR.SLIALTQKNQLI.F.NGTP.S.CQLPFGDPCAVHLMD..
Retrocopy SDTFIIPPAYSNLVTCVHVCASEIINGQLRISLIALTQKNQLISFQNGTPKSICQLPFGDPCAVHLMDSG

Parental  GGNFFFIVSFRSNDVCAVWEKNFQVAAKWEKISLVLIDDFIGTGTEQVLLLFKDSLNSDCLTSFQITNLE
          GGNF.FIVSFRSND.CAVWEKNFQVAAKWEKISL.LIDDFIGTGTEQVL.LFKDSLNSDCLTSFQ.TN.E
Retrocopy GGNFYFIVSFRSNDACAVWEKNFQVAAKWEKISLILIDDFIGTGTEQVLVLFKDSLNSDCLTSFQMTNFE

Parental  NINYSSEPLDCSEDDLFEGKQDNRHLVIPPLESRIKVGVASVQRLQQHILLKDKIILQSYKALINLLQGR
          .INYSSEPLDC.EDDLFE.KQDNR.LVIPPLE.RIKVG.ASVQ.LQQHILLKDKIIL.SYKALINLLQG.
Retrocopy SINYSSEPLDCTEDDLFEDKQDNRYLVIPPLERRIKVGAASVQELQQHILLKDKIILKSYKALINLLQGK

Parental  DDNTSSVKEKESLALLCGEEENSVNTFDEKLPDSFQDSKQLVEKIWYRVIDDSLVVGVKTTSSLELSLND
          DDNTSSV.E.E.LA.LCGEEENS..TFDEKLPD.FQDSKQLVEKIWYRVIDDSLVVGVKT.SSLELSLND
Retrocopy DDNTSSVRE-ECLAPLCGEEENSEYTFDEKLPDNFQDSKQLVEKIWYRVIDDSLVVGVKTSSSLELSLND

Parental  ATLSLLMDQAHGSSSQLIKCQSSVIKLSMDSLPEPHLTPDEIGSEAKKIKLILDSEEKESFLCEQPSKKE
          .TLSLLM.QAHGSS..LIKCQ..VIKLSMDSLPEPHL.P..IGSEAKKIKL.LD.EEKE.F..EQ.S..E
Retrocopy VTLSLLMNQAHGSSYHLIKCQNRVIKLSMDSLPEPHLMPYKIGSEAKKIKLTLDNEEKEIFVREQSSQRE

Parental  CVQIITAVTSLSPLLAFSKFCCIVLLHIMERENDDCPQDDYIQCGRLFIRLEDLSSGKCLLTFPKKKPIE
          .V.IITA.TSLSPLLA.SKFCCIVLLHIM.REN.D.PQD.YI.CGRLF..L.DLSS.KCLL.FPKKKP.E
Retrocopy YVPIITAITSLSPLLALSKFCCIVLLHIMKRENGDYPQDHYIPCGRLFVSL-DLSSEKCLLMFPKKKPVE

Parental  HQEDLFALFAAFHKSCFQIISPGYALKAMKVWLLERMKCEVIKEFPEVCFCKRPENFYGTLFKWQQRTLF
          H.EDLFALFA.FHKSCFQI.SPGYALKAMK.WLLE.M.CEVIKEFPEVCFCKRP.N.YGTLFKW.QRTLF
Retrocopy HKEDLFALFAVFHKSCFQITSPGYALKAMKAWLLECMNCEVIKEFPEVCFCKRPGNLYGTLFKWKQRTLF

Parental  EGILIIYSRNQTVLFQCLHKLISVLPTDCLLRNLKLENEDFLIDYMALSLEKELNILGSLSSSLAKVDSI
          EGILIIYSRNQTVLFQCLHKLI.VLP..CLLRNLKLENEDFL.DYMALSLEKEL.I.GSLSS.LAKVDS.
Retrocopy EGILIIYSRNQTVLFQCLHKLIGVLPINCLLRNLKLENEDFLVDYMALSLEKELVIFGSLSSALAKVDSN

Parental  YMPRCEATKGKSSVVA-ALPDREKEIRWYRKEVQRAKKKTLRTKLKVSGALYRALTLKVAEVQLKSDLTA
          .M.RCEA.KG.SSV.A.ALPDREKEI.WYRKEVQRAKKK.LRTKLKVSGALYRAL.LKVAEVQLKSDLTA
Retrocopy FMQRCEASKGDSSVLADALPDREKEIHWYRKEVQRAKKKMLRTKLKVSGALYRALALKVAEVQLKSDLTA

Parental  EKLTNL
          .KLTNL
Retrocopy QKLTNL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_216 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000008747	1 retrocopy	retro_ogar_216 ,
Pteropus vampyrus	ENSPVAG00000000827	1 retrocopy	retro_pvam_1125,