RetrogeneDB ID: retro_ogar_2137

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873595.1:6002190..6003045(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000031566
• Aliases: None
• Description: None

Sequence

>retro_ogar_2137
GATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCGGCCATCTTATCTGGTGACAAATCCGAGAATGTTCAGGATTTGCT
ACTATTGGATGTCACTCCTCTTTCTCTGGGTATTGAGACTGCTGGTGGAGTTATGACTGTGCTCATTAAGCGCAATACCA
CTATTCCAACCAAGCAGACACAGACCTTCACTACCTACTCTGACAACCAGCCAGGTGTGCTCATCCAGGTTTATGAAGGT
GAGCGTGCCATGACCAAGGATAACAACTTGCTTGGCAAGTTTGAACTTACAGGCATACCTCCTGCTCCCCGTGGTGTTCC
TCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCTGCTGTGGATAAGAGTATAGGAAAAGAAA
ATAAGATTACCATCACTAACGACAAGGGACGTTTGAGCAAGGAAGACATTGAACGTATGGTCCAGGAAGCTGAGAAGTAC
AAGGCTGAAGATGAGAAGTAGAGGGACAAGGTTTCATCAAAGAATTCACTTGAGTCCTATGCATTCAACATGAAAGCAAC
TGTTGAAGATGAGAAACTTCAAGGCAAGATCAATGATGAAGACAAACAGAAGATTCTTGACAAGTGTAATGAAATTATCA
ACTGGCTTGATAAGAACCAGACTGCAGAGAAGGAAGAATTTGAACATCAACAGAAGGAGCTGGAGAAAGTCTGCAACCCC
ATCATTACCAAGTTGTACCAGAGTGCAGGCGGAATGCCAGGGGGCATGCCAGGAGGAATGCCTGGGGGCTTTCCTGGTGG
TGGTGCTCCTCCTTCTGGTGGTGCTTCCTCTGGCCCCACCATTGAAGAGGTTGAT

Alignment

ORF - retro_ogar_2137 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.04 %
• Parental protein coverage: 75.8 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQ
          DEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQ
Retrocopy DEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQ

Parental  PGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITN
          PGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKS.GKENKITITN
Retrocopy PGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSIGKENKITITN

Parental  DKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCN
          DKGRLSKEDIERMVQEAEKYKAEDEK.RDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCN
Retrocopy DKGRLSKEDIERMVQEAEKYKAEDEK*RDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCN

Parental  EIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGMPGGFPGGGAPPSGGASSGPT
          EIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQS...............FPGGGAPPSGGASSGPT
Retrocopy EIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSXXXXXXXXXXXXXXXFPGGGAPPSGGASSGPT

Parental  IEEVD
          IEEVD
Retrocopy IEEVD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2137 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000031566	8 retrocopies	retro_ogar_1036, retro_ogar_202, retro_ogar_2137 , retro_ogar_2223, retro_ogar_2693, retro_ogar_3024, retro_ogar_3242, retro_ogar_458,
Rattus norvegicus	ENSRNOG00000034066	1 retrocopy	retro_rnor_1221,