RetrogeneDB ID: | retro_ogar_2132 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873594.1:1173144..1173558(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | C3orf83 | ||
| Ensembl ID: | ENSOGAG00000031425 | ||
| Aliases: | None | ||
| Description: | chromosome 3 open reading frame 83 [Source:HGNC Symbol;Acc:40375] |
Retrocopy-Parental alignment summary:
>retro_ogar_2132
AGGGAGCATGCTGGGAGGTCTGATCTTCATGTTGGAATAACTAACACAAATGGAGTTGTGTATAATTACAACAAGCATGG
TGTCCAGCGTGATGACTCAGGGTCGGAGCAGAGCATAAGCTTCCCATTACTACAGCCCAACATGTACGGACTGATGGACC
AGTGGGACAAGTACCTGGAAGACTTCTACACCTCAGGGCTCTGGCTGCCCTACAGGTACAAAGAAGACAGTCACAACCTC
TACAGTTATGCCCTCACCTTCATTAACTGCTTCCTGACCACAGAAGGCAAAGAGCAACTGGACAAGAGTGAATTCACAGA
GAGATACGTGGTCCGGAGGACAAGGCTGGCTTCCAAGTACATCACAGTCCACCGGCCAATAGAAGAGCAGGGCTTCTACG
TGACTGACCTTCCC
ORF - retro_ogar_2132 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 89.13 % |
| Parental protein coverage: | 67.32 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | RDYDGRSDLHVGITNTNGAVYNYNMHGVQRDNSGWEQSISIPLLQPNMYGLMDQWDKYLEDFSTSGSWLP |
| R...GRSDLHVGITNTNG.VYNYN.HGVQRD.SG.EQSIS.PLLQPNMYGLMDQWDKYLEDF.TSG.WLP | |
| Retrocopy | REHAGRSDLHVGITNTNGVVYNYNKHGVQRDDSGSEQSISFPLLQPNMYGLMDQWDKYLEDFYTSGLWLP |
| Parental | HRYKEDSHNCYSYALTFINCVLTTEGKEQLDKSEFTERYVVPRTRLASKYITVHRAIEEQGFYVTDLP |
| .RYKEDSHN.YSYALTFINC.LTTEGKEQLDKSEFTERYVV.RTRLASKYITVHR.IEEQGFYVTDLP | |
| Retrocopy | YRYKEDSHNLYSYALTFINCFLTTEGKEQLDKSEFTERYVVRRTRLASKYITVHRPIEEQGFYVTDLP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2132 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000031425 | 1 retrocopy |
retro_ogar_2132 ,
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