RetrogeneDB - Retrocopy retro_ogar

                        
>retro_ogar_2108
ATGCCACAGCAGCTGCTGGTCACCCTGACCACTAAAGCCAGCACCTGGGTGAAGTTGCACCATCCAAAGAAGGGCAAGGA

GGGGGCACCCCAGGGGGAAGATGTGACCAAAATGTTTGAAGGAGAAGTTCTGTTGTCTCAGGATATTAATGTGACCCAAG

GAGAAAACTTAGAGAACAAAATGACCTCTGTACCCCCAGCATTAGAATACCAAGACCTGCTAACCTTCAACAACATATCT

ATTGACTTCACCCAGGATCAGTGGGGGCACTGGCCTCTGCTCACCAGGATTTGTACTGAGAGGTGATGCTAGAGAACTAC

AGGAACTTGGTGTCAGTGGGATATCAACTTTCTAAACCTAGTGTGATTTCCCAGTTGAAGAAAGGAGAAGAACCATGGAT

GACAGAGAAAGAAGGCCCAGAAGATCTCAGTTCGGACTTGAAGAGTAAAAGAGAAACCAATGAATCAAAGAATTCCATTT

CACAAGAACAATTATATCATGGCATTTTGATGGAAGGGGTCATGAAAGATGATATCATTTATTCCACATTGAGAAAAGTC

TCCAAATATGATGATGTGTTATAAAGGCACGGGCAAACCTGTGTGAGAGATATGAGACAAACCATCTTGATCGATAAAAA

GGCCAAGAAACAAACAAATTTGGGGGAAATATCATTGAGAGTTCAAATGTTATTACAGAATGGAGGCATCATAAATGTGA

TACACCTAGAAAGAGGAACAAATACAAATTAGATTTGATTAATCATACAACAAGTTACATAAACCAAAAACCTATGAACA

TAATATATGCAAAAAATATTTTCAAACAACCCATTCACCTTACTGAACACATGAGAATTCATACTGGTGAGAAACCTTTC

AGATGTAAAGAATATGGAAGGGCCTTTAATCAAAGTGCAACAGTACACATCAGAGAATTCATACTGGTGAGAAGCCCTTT

GAATACAACCAGTGCTGCCAAGTCTTCAGACATCGCTCATCATTTAATCAGCATTATAGAACTCACACTGGGGAGAAACC

CTACATGTGTGATAAATGTCAGAAAGCTTTTCAGCCAGAACATTACCTTGATCGAACATTTGAGGACTCATTCTGGAGAG

AAACCTTTCCCTTGCAATGAATGTGGGGAAAACCTTTCAACAGATA

ORF - retro_ogar_2108 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	76.0 %
Parental protein coverage:	75.0 %
Number of stop codons detected:	2
Number of frameshifts detected:	7

Retrocopy - Parental Gene Alignment:

                                ParentalMPQQLLITLPTKANTWVKLHHPKKAKEGAPRWEDVTKMFEGEILLSQDADAAQGESLEDEMTSVPPAAES
MPQQLL.TL.TKA.TWVKLHHPKK.KEGAP..EDVTKMFEGE.LLSQD....QGE.LE..MTSVPPA.E.
RetrocopyMPQQLLVTLTTKASTWVKLHHPKKGKEGAPQGEDVTKMFEGEVLLSQDINVTQGENLENKMTSVPPALEY
ParentalQELLTFNDISIDFSQDEWGQ-LAPAHQDLYREVMLENYRNLVSVGYQLSKPSVISHLEKGEEPWMTEKEG
Q.LLTFN.ISIDF.QD.WG..LA.AHQDLY.EVMLENYRNLVSVGYQLSKPSVIS.L.KGEEPWMTEKEG
RetrocopyQDLLTFNNISIDFTQDQWGH<LASAHQDLY*EVMLENYRNLVSVGYQLSKPSVISQLKKGEEPWMTEKEG
ParentalPADPSSGLKSKTETNESTAKNSISEEQLYHGILMEKVMKDDIIYSTLRKVSQYDDTLEMHQESCVRDVRQ
P.D.SS.LKSK.ETNES..KNSIS.EQLYHGILME.VMKDDIIYSTLRKVS.YDD.L..H...CVRD.RQ
RetrocopyPEDLSSDLKSKRETNES--KNSISQEQLYHGILMEGVMKDDIIYSTLRKVSKYDDVL*RHGQTCVRDMRQ
ParentalTILTHKKRGQKTNKFGE-NIIMSSNVLIEQRHHKCDTTRKRNKYKLDLTNHPTSYI-RPKTYECNICEK-
TIL..KK....TN..GE.NII.SSNV..E.RHHKCDT.RKRNKYKLDL.NH.TSYI..PKTYE.NIC.K.
RetrocopyTILIDKKAKKQTN-LGE<NIIESSNVITEWRHHKCDTPRKRNKYKLDLINHTTSYI<KPKTYEHNICKK>
ParentalIFKQPIHLTEHMRIHTGEKPFRCKECGRAFSQSASLSTHQRIHTGEKPFECEECGKT-FRHRSSLNQHHR
IFKQPIHLTEHMRIHTGEKPFRCKE.GRAF.QSA.......I.....P.......K..FRHRSS.NQH.R
RetrocopyIFKQPIHLTEHMRIHTGEKPFRCKEYGRAFNQSATVHIREFILV-RSPLNTTSAAKS<FRHRSSFNQHYR
ParentalTHTGEKPYVCDKCQKA-FSQNISLVQHLRTHSGEKPFTCNEC-GKTFRQI
THTGEKPY.CDKCQKA.FSQNI.L..HLRTHSGEKPF.CNEC.GKTF.QI
RetrocopyTHTGEKPYMCDKCQKA>FSQNITLIEHLRTHSGEKPFPCNEC>GKTFQQI

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_2108 was not experimentally validated.

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000009257	1 retrocopy	retro_ogar_2108 ,

	RetrogeneDB ID:	retro_ogar_2108
Retrocopy location	Organism:	*Bushbaby (Otolemur garnettii)*
	Coordinates:	GL873591.1:9802238..9803404(+)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	ZFP69
	Ensembl ID:	ENSOGAG00000009257
	Aliases:	None
	Description:	ZFP69 zinc finger protein [Source:HGNC Symbol;Acc:24708]

Parental	MPQQLLITLPTKANTWVKLHHPKKAKEGAPRWEDVTKMFEGEILLSQDADAAQGESLEDEMTSVPPAAES
	MPQQLL.TL.TKA.TWVKLHHPKK.KEGAP..EDVTKMFEGE.LLSQD....QGE.LE..MTSVPPA.E.
Retrocopy	MPQQLLVTLTTKASTWVKLHHPKKGKEGAPQGEDVTKMFEGEVLLSQDINVTQGENLENKMTSVPPALEY

Parental	QELLTFNDISIDFSQDEWGQ-LAPAHQDLYREVMLENYRNLVSVGYQLSKPSVISHLEKGEEPWMTEKEG
	Q.LLTFN.ISIDF.QD.WG..LA.AHQDLY.EVMLENYRNLVSVGYQLSKPSVIS.L.KGEEPWMTEKEG
Retrocopy	QDLLTFNNISIDFTQDQWGH<LASAHQDLY*EVMLENYRNLVSVGYQLSKPSVISQLKKGEEPWMTEKEG

Parental	PADPSSGLKSKTETNESTAKNSISEEQLYHGILMEKVMKDDIIYSTLRKVSQYDDTLEMHQESCVRDVRQ
	P.D.SS.LKSK.ETNES..KNSIS.EQLYHGILME.VMKDDIIYSTLRKVS.YDD.L..H...CVRD.RQ
Retrocopy	PEDLSSDLKSKRETNES--KNSISQEQLYHGILMEGVMKDDIIYSTLRKVSKYDDVL*RHGQTCVRDMRQ

Parental	TILTHKKRGQKTNKFGE-NIIMSSNVLIEQRHHKCDTTRKRNKYKLDLTNHPTSYI-RPKTYECNICEK-
	TIL..KK....TN..GE.NII.SSNV..E.RHHKCDT.RKRNKYKLDL.NH.TSYI..PKTYE.NIC.K.
Retrocopy	TILIDKKAKKQTN-LGE<NIIESSNVITEWRHHKCDTPRKRNKYKLDLINHTTSYI<KPKTYEHNICKK>

Parental	IFKQPIHLTEHMRIHTGEKPFRCKECGRAFSQSASLSTHQRIHTGEKPFECEECGKT-FRHRSSLNQHHR
	IFKQPIHLTEHMRIHTGEKPFRCKE.GRAF.QSA.......I.....P.......K..FRHRSS.NQH.R
Retrocopy	IFKQPIHLTEHMRIHTGEKPFRCKEYGRAFNQSATVHIREFILV-RSPLNTTSAAKS<FRHRSSFNQHYR

Parental	THTGEKPYVCDKCQKA-FSQNISLVQHLRTHSGEKPFTCNEC-GKTFRQI
	THTGEKPY.CDKCQKA.FSQNI.L..HLRTHSGEKPF.CNEC.GKTF.QI
Retrocopy	THTGEKPYMCDKCQKA>FSQNITLIEHLRTHSGEKPFPCNEC>GKTFQQI

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_ogar_2108