RetrogeneDB ID: | retro_ogar_1988 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873579.1:10194348..10195148(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ATG14 | ||
| Ensembl ID: | ENSOGAG00000015413 | ||
| Aliases: | None | ||
| Description: | autophagy related 14 [Source:HGNC Symbol;Acc:19962] |
Retrocopy-Parental alignment summary:
>retro_ogar_1988
GTGATGGAAACGAAAAAGTGAAGGGAAGACCCTGCAGATGTGCCTTCCGAGAGTGACAGCACCGTGACCTCCAGCACCGT
GACCAGCCTGCTGAAGCCCGGAGGTCGACTACCTCTCAGGACCGAGAGTCTGTGACAGTCACAACGGAGACACCAGCATT
AGCATCGCAGGGCCGTGGATCAGCCTCCTAACCACGGCGACTACTCCACCTGCTATGGTTGGGTGGAAGACAAGAAAACA
GCACAGGGGCCCGAGGGGGAGCACAGCGGCCCAGCTCGCTGTCAGTGCTGTGCTATGCTGTGCCACTCAGCTGGGCCACA
GTCTCACATACTTCATGGGAATCTGCCCCAACAGCTGTGCAACAGTGAATTTAGTGGGGAATACCTCTGCAGGCAGGGAT
TTATTAGAGCAGTGAAGAAATGGAATGCAAACATTCTCTACCTTCATTTTGCCCAGCATGTAAATTTAGATCAATTGCAA
CCACTGCATACCCTCAGGAATCTAATGGACTTGGTCACTTCAAACTTCGAACACCTAGGCAGGTAGGAGCCCTTTGAAGG
GAGAGCAGAGCCTGAGGAGTCTGTGGAATTTGTAGATCCACAGACTCCAGCTGCTGGAGAATCTGATGAGCATGGAGACT
AGCATGTAAGCGACAAGGAAGCAGACCTGGGCACAGACTGGGAGAACCTGCCAAACCCCGATTTTGTGATATCCCTTCCC
AGTTCATGGAAGTCTCCCAGAGCCAGAGCAGCCAGGCCTGTCCACCCATTGCTAGCAGCAGTGCAGGGGGGATGATCTCC
ORF - retro_ogar_1988 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 67.03 % |
| Parental protein coverage: | 54.47 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 6 |
Retrocopy - Parental Gene Alignment:
| Parental | IEEVKTGVRDPADVSSESDNAMTSSTVSKL-AEARRTT-YLSGRWVCDDHNGDTSISIIGPWISL-PNNG |
| ..E.K....DPADV.SESD...TSSTV..L.AEARR.T.YLSG..VCD.HNGDTSISI.GPWISL.PN.G | |
| Retrocopy | VMETKK*REDPADVPSESDSTVTSSTVTSL<AEARRST<YLSGPRVCDSHNGDTSISIAGPWISL<PNHG |
| Parental | DYSAYYNWVEEKKTTQGPDMEHNNPAHTISAAL-CYATQLVNILSHMLDVNLPKKLCNSEFCG-ENLSKQ |
| DYS..Y.WVE.KKT.QGP..EH..PA.....A..C.ATQL...L........P.........G.E.L..Q | |
| Retrocopy | DYSTCYGWVEDKKTAQGPEGEHSGPARCQCCAM>C-ATQLGHSLTYFMGI-CPNSCATVNLVG<EYLCRQ |
| Parental | KFTRAVKKLNGNILYLCFSQHVNLDQLQPLHTLRNLMYLVSPNSEHLGRSGPFEVRAELEESMEFVDP-- |
| .F.RAVKK.N.NILYL.F.QHVNLDQLQPLHTLRNLM.LV..N.EHLGR..PFE.RAE.EES.EFVDP.. | |
| Retrocopy | GFIRAVKKWNANILYLHFAQHVNLDQLQPLHTLRNLMDLVTSNFEHLGR*EPFEGRAEPEESVEFVDPQT |
| Parental | GAAGESDESGDEHISDEETDLGTDWENLPS-PRFCDIPSQPVEVSQSQSSQACPPIVSSSAGGMIS |
| .AAGESDE.GD.H.SD.E.DLGTDWENLP..PRFCDIPSQ..EVSQSQSSQACPPI.SSSAGGMIS | |
| Retrocopy | PAAGESDEHGD*HVSDKEADLGTDWENLPN<PRFCDIPSQFMEVSQSQSSQACPPIASSSAGGMIS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1988 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Monodelphis domestica | ENSMODG00000007529 | 1 retrocopy | |
| Otolemur garnettii | ENSOGAG00000015413 | 1 retrocopy |
retro_ogar_1988 ,
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