RetrogeneDB ID: retro_ogar_195

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL874141.1:11893..16054(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000008192
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000009294
• Aliases: None
• Description: None

Sequence

>retro_ogar_195
ATGGCCCCAGTGGAGCTGGAGAACCACCAGCTGGTCCAGCCCGGAGCCGGCGGCGCGGTTCGCGGAGGCCCGGCGTCAGC
CCCGGCTCCTCCTCCTCCGGGAGCCGCCCTGGCGGCGGCAGCTGCAACTGCAGCTAGCCCTGGCTACCGGCTGAGCACCC
TCATTGAATTTCTGCTGCACCGGGCCTACTCTGAGCTCATGGTGTTGGCTGACCTACTTCCAAGGAAATCTGATGTGGAA
AGGAAAATGGAAATAGTGCAGTTTGCTAGCCGGACACACCAACTCTTCGTTCGATTGTTAGCTTTAGTAAAATGGGCTAA
AGATGTCGGCAAAGTGGAAAAATGTGCGATGATCTCAAGCTTTTTAGATCAGCAAGCCCTCCTGTTTGTGGACGCTGCTG
ATCGCCTGGCCTCATTAGCTAGAGACGCTCTAGTCCATGCACGCCTGCCTAGTTTTGCCATTCCATATGCTATTGATGTA
CTGACTACTGGGTCTTACCCACGGCTGCCAGCCTGTATAAGGGATAAAATTATTCCTCCAGACCCAGTCACGAAAATTGA
AAAACAAGCCACACTTCATCAGCTGAATCAGATTCTTAGACATCGGCTTGTAACCACAGATCTTCCTCCTCAGTTAGCAA
ATCTTACGGTTGCAAATGGCCGAGTGAAGTTTCGAGTTGAAGGAGAATTTGAAGCCACCTTGACTGTAATGGGAGATGAC
CCTGATGTTCCATGGCACCTTCTCAAGCTAGAAGTTCTAGTTGAGGATAAGGAAACAGGAGATGGGCGAGCTTTGGTTCA
TAGTATGCAAATCAACTTTATCCATCAGCTGGTGCAGTCCAGGCTTTTTGCTGATGAGAAACCACTTCAGGACATGTACA
ACTGCCTCCATTCTTTCTGCTTATCACTTCAGTTAGAAGTATTACATTCCCAGACTCTAATGTTAATCCAGGAGCGGTGG
GGAGACCTTGTGCAGGTGGAAAGGTATCATGCTGGAAAGTGCCTCTCCCTCTCCGTTTGGAATCAACAGGTTCTTGGGAG
AAAAACAGGCACCGCATCTGTTCATAGAGTTACAATTAAAATTGATGAGAATGATGTCTCTACACCTTTACAGATTTTTC
ATGATCCTCCTTTGCCAGCTTTAGATTCCCAATCAGTAGAAAGAGCCATGAAGATTGACCACTTATCAATAGAAAAACTC
CTGATTGATAGTGTCCATGCAAGAGCTCATCAGAAGCTCCAGGAACTGAAGGCCATTCTTAGAGGCTTCAATGCCAATGA
AAACTCTTCCATAGAGACTGCACTTCCAGCCCTGGTTGTTCCCATCTTGGAGCCCTGCGGCAGTTCAGAGTGTCTGCACA
TTTTTGTAGATTTGCATTCTGGAATGTTCCAACTGATGCTTTACGGACTTGACCAAAACACTCTGGACGACATGGAGAAG
TCTGTGAATGATGATATGAAACGGATCATTCCCTGGATTCAGCACCTTAAATTTTGGCTTGGACAGCAACGATGCAAACA
ATCTATAAAGCATCTGCCTACAACAAGCAGTGAAACATTGCAGCTTTCTAATTACTCAATACATCCTATTGGAAACCTTT
CTGAGAATAAGCTGTTTATTAAACTTACCCGCCTTCCTCAATATTACATTGTTGTGGAGATGTTGGAGGTTCCCAGTAAC
CCCACGCAGCTGTCATACAAGTACTACTTCCTATCTGTGAATGCAACAGATCAAGAAGACAGCCCTATCATGGCACTGCT
GCAGCAGCAGTTCAAGGAAGACGTCCAAGACTTGATTTTTCATACAAAATCTGGGAAACAGACCAGAACCAGTACCAAGC
ACAAGTTATCTGATGATCCATGTCCAGTAGAATCCAAGAAAACCAAACGATCGGGAGAAATGTGTGCCTTCAATAAAGTT
CTAGCTCACTTTGTTGCTATATGTGACACAAATATGCCATTTGTCAGACTTCAATTGGAGTTGTCCAATCTGGATATTCC
ACATCAAGGAGTGCAAGTGGAAGGTAATGGCTTCAGCCATGCACTTCCCTTATTAAAAATTCCTCCTTGTCAGGGTATAA
GTGAAGAAACACAAAAGGCTCTGGACCGCTCTCTTCTTGATTGCACTTTCCGATTACAAGGTAGAAATAACCGCACATGG
GTGGCAGAGTTAGTGTTTGCAGACTGTCCCCTTATTGGCACTTCTACTAGGGAGCAAGGACCGTTCAGGCATGTTTACCT
TACATATGAAAATGTGTTGTCTGAACCTGTTGGTGGTAGAAAAATAGTTGAAACGTTCCTTAATGACTGGAGTAGTATTG
CACGATTATATGAGTGTGTTTTGGAATATGCACATTCTCTACCAGACCTACCTGCTCATCTAAATATTTTCTCCGAAGTT
CGTGTGTATAATTACCAAAAACTTATTTTGTGTTATGGAACTACCAAGGGAAGTTCAATTAGTATCCAATGGAATTCCAT
CCATCAGAAATTTCACATTTCCTTGGGAACTGTTGGCCCAAACTCAGGTTGCAGTAATAGTCACAATACCATTCTTCATC
AACTTCAAGAAATGTTCAACAAAACACCAAATGTAGTTCAGTTATTACAGGTACTGTTTGATACTCAGGCTCCATTGAAT
GCCTTCAACAAACTCCGCACTGTGCCGATGCTGGGCTTGACCCAGAGAACCAACACTGCCTACCAATGCTTCTCCATTCT
GCCACAGTCATCCACCCACATCAGACTGGCCTTTAGGAACACGTACTGCATTGATATATACTGCCAGAGTGGTGGTGTTG
TGGCAATACGAGATGGTGCCTATAGTCTTTTCGATAACAGCAAATTAGTTGAAGGTTTTTATCCTGCACCAGGACTAAAG
ACATTCCTGAATATGTTTGTTGACAGCAATCAGGGTGCTCAAAGAAGGTCTATAACCGAGGATGATAATCCCCCTTCTCC
TATAGGAGGAGATATGATGGATTCTTTAATATCACAACTCCAGCCTCCAACCCAGCAACAGCCATTTTCAAAGCAGCCAG
GAACATCGGGCACTTATCCTATTACTTCACCCCCTCCATCTTACCACAGCACCATTAATCAGTCTCCCTCTATGATGCAT
GCACAGTCTCCAGGAACTCTTGACCCTAGTTCACCGTATAATATGGTGTCACCAAGTGGACAAGCAGGGAACTGGCCAGG
GTCACCTCAAGTATCTGGCCTCTCACCAACAACATTCATGCCAGGAATGTCACCAGCCAATCCATCACTACATTCTCCTG
TTCCAGACACTTCTCATTCCCCTCAAGCTGGAACAAGTTCCCAAACAATGCCAACAAACATGCCTCCACCCCGTAAACTA
CCTCAGCGCTCTTGGGCAGCATCCTCACCTACTATCCTGACTCACAGTGCCTTGAACATTTTACTGCTGCCCTCACCAAT
GCCGGGCCTTATGCCTGGCTTGGCAGGCAGTTACCTGTGTTCTCCACTTGAGAGATTTCTTGGATCAGTCATCATGAGAA
GACACCTTCAAAGAATTATTGAACAAGAAATGCTGCAGCTGATAAATTCCAATGAACCTGGAGTAATAATGTTTAAAACT
AATGCACTGAAATGCAGAGTAGCCCTGAGTCCCAAAACCAACCAGACACTTCAGCTAAAAGTGACACCTGAAAACGCAGG
ACAGTGGAAACCTGAGGAACTTCAAGTTTTAGAGAAATTCTTTGAAACAAAGGTTGTAGGACCACCATTTAAAGCTAATA
CATTAATAGCCTTCACCAAGCTTTTAGGAGCTCCTACACACATCCTCAGGGACTGTGTGCACATTATGAAGCTGGAGCTT
TTCCCTGATCAGGCAACACAGCTAAAGTGGAATGTTCAGTTCTGCCTGACGATCCCTCCGAGCGCACCACCGATTGCACC
TCCTGGAATGCCTGCTGTAGTGCTGATATCCAAAATGCTATTTTTTCTTCAGCTTACTCAGAAAACAGCGGTCCCTTCCC
AAGAACCTCTTAGTGTTATAGTTCCAATCATTTATGACATGGCTTCAGGTACAACCCAGCAGGCAGACATTCCCAGACAG
CAGTACTCTTGTGTTGCTGCTCGCATGATGGTCGGCAACATTCTGAAGAGATTTGCAGAGATGAATCCACCACGGCAAGG
T

Alignment

ORF - retro_ogar_195 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.5 %
• Parental protein coverage: 77.03 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAPVQLENHQLVQPGGGGAGSSGPVSAPAPPPPGAAVAAAAAAAASPGYRLSTLIEFLLHRAYSELMVLT
          MAPV.LENHQLVQPG.GGA...GP.SAPAPPPPGAA.AAAAA.AASPGYRLSTLIEFLLHRAYSELMVL.
Retrocopy MAPVELENHQLVQPGAGGAVRGGPASAPAPPPPGAALAAAAATAASPGYRLSTLIEFLLHRAYSELMVLA

Parental  DLLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWANDAGKVEKCAMISSFLDQQAILFVDTADRLASLA
          DLLPRKSDVERK.EIVQFASRT.QLFVRLLALVKWA.D.GKVEKCAMISSFLDQQA.LFVD.ADRLASLA
Retrocopy DLLPRKSDVERKMEIVQFASRTHQLFVRLLALVKWAKDVGKVEKCAMISSFLDQQALLFVDAADRLASLA

Parental  RDALVHARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTTDLPP
          RDALVHARLPSFAIPYAIDVLTTGSYPRLP.CIRDKIIPPDP.TKIEKQATLHQLNQILRHRLVTTDLPP
Retrocopy RDALVHARLPSFAIPYAIDVLTTGSYPRLPACIRDKIIPPDPVTKIEKQATLHQLNQILRHRLVTTDLPP

Parental  QLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALVHSMQINFIHQLVQS
          QLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPW.LLKLE.LVEDKETGDGRALVHSMQINFIHQLVQS
Retrocopy QLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWHLLKLEVLVEDKETGDGRALVHSMQINFIHQLVQS

Parental  RLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQVERYHAGKCLSLSVWNQQVLGRKTG
          RLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLI.ERWGDLVQVERYHAGKCLSLSVWNQQVLGRKTG
Retrocopy RLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIQERWGDLVQVERYHAGKCLSLSVWNQQVLGRKTG

Parental  TASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLVERAMKIDHLSIEKLLIDSVHARAHQKLQELKAIL
          TASVH.VTIKIDENDVS.PLQIFHDPPLPA.DS..VERAMKIDHLSIEKLLIDSVHARAHQKLQELKAIL
Retrocopy TASVHRVTIKIDENDVSTPLQIFHDPPLPALDSQSVERAMKIDHLSIEKLLIDSVHARAHQKLQELKAIL

Parental  RGFNANENSSIETALPALVVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRII
          RGFNANENSSIETALPALVVPILEPCG.SECLHIFVDLHSGMFQLMLYGLDQ.TLDDMEKSVNDDMKRII
Retrocopy RGFNANENSSIETALPALVVPILEPCGSSECLHIFVDLHSGMFQLMLYGLDQNTLDDMEKSVNDDMKRII

Parental  PWIQQLKFWLGQQRCKQSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNK
          PWIQ.LKFWLGQQRCKQSIKHLPT.SSETLQLSNYS.HPIGNLS.NKLFIKLTRLPQYYIVVEMLEVP..
Retrocopy PWIQHLKFWLGQQRCKQSIKHLPTTSSETLQLSNYSIHPIGNLSENKLFIKLTRLPQYYIVVEMLEVPSN

Parental  PTQLSYKYYFLSVNATDREDSPIMALLLQQFKEDVQDLIFHAKSGKQTRTGTKHKLSDDPCPVESKKTKR
          PTQLSYKYYFLSVNATD.EDSPIMALL.QQFKEDVQDLIFH.KSGKQTRT.TKHKLSDDPCPVESKKTKR
Retrocopy PTQLSYKYYFLSVNATDQEDSPIMALLQQQFKEDVQDLIFHTKSGKQTRTSTKHKLSDDPCPVESKKTKR

Parental  SGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLKIPPCKGISEETQKA
          SGEMCAFNKVLAHFVA.CDTNMPFV.L.LELSNL.IPHQGVQVEG.GFSHA..LLKIPPC.GISEETQKA
Retrocopy SGEMCAFNKVLAHFVAICDTNMPFVRLQLELSNLDIPHQGVQVEGNGFSHALPLLKIPPCQGISEETQKA

Parental  LDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVYLTYENLLSEPVGGRKVVEMFLNDW
          LDRSLLDCTFRLQGRNNRTWVAELVFA.CPL.GTSTREQGP.RHVYLTYEN.LSEPVGGRK.VE.FLNDW
Retrocopy LDRSLLDCTFRLQGRNNRTWVAELVFADCPLIGTSTREQGPFRHVYLTYENVLSEPVGGRKIVETFLNDW

Parental  SSIARLYECVLEFARSLPDIPTHLNIFSEVRVYNYRKLILCYGTTKGSSISIQWNSIHQKFHISLGTVGP
          SSIARLYECVLE.A.SLPD.P.HLNIFSEVRVYNY.KLILCYGTTKGSSISIQWNSIHQKFHISLGTVGP
Retrocopy SSIARLYECVLEYAHSLPDLPAHLNIFSEVRVYNYQKLILCYGTTKGSSISIQWNSIHQKFHISLGTVGP

Parental  NSGCSNCHNTILHQLQEMFNKTPNVVQLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQS
          NSGCSN.HNTILHQLQEMFNKTPNVVQLLQVLFDTQAPLNA.NKL.TVPMLGLTQRTNTAYQCFSILPQS
Retrocopy NSGCSNSHNTILHQLQEMFNKTPNVVQLLQVLFDTQAPLNAFNKLRTVPMLGLTQRTNTAYQCFSILPQS

Parental  STHIRLAFRNMYCIDIYCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNE
          STHIRLAFRN.YCIDIYC.S.GVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQ.A.RRS..E
Retrocopy STHIRLAFRNTYCIDIYCQSGGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQGAQRRSITE

Parental  DDNPPSPIGGDMMDSLISQLQPPTQQQPFSKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGNLHAA
          DDNPPSPIGGDMMDSLISQLQPPTQQQPFSKQPGTSG.YP.TSPP.SYHST.NQSPSMMH.QSPG.L...
Retrocopy DDNPPSPIGGDMMDSLISQLQPPTQQQPFSKQPGTSGTYPITSPPPSYHSTINQSPSMMHAQSPGTL---

Parental  NSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPS--SPYTMVSPSGRAGNWPGSPQVSGP
          ..PS......SP.......P.S.......P...F........PS..SP....S.S..AG..........P
Retrocopy -DPSSPYNMVSPSGQAGNWPGSPQVSGLSP-TTFMPGMSPANPSLHSPVPDTSHSPQAGTSSQTMPTNMP

Parental  SP
          .P
Retrocopy PP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_195 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000009294	1 retrocopy	retro_ogar_195 ,