RetrogeneDB ID: | retro_ogar_1939 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873576.1:8492166..8492835(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NCEH1 | ||
| Ensembl ID: | ENSOGAG00000000976 | ||
| Aliases: | None | ||
| Description: | neutral cholesterol ester hydrolase 1 [Source:HGNC Symbol;Acc:29260] |
Retrocopy-Parental alignment summary:
>retro_ogar_1939
TGCTTGCTGCTCCCAGTGTGGGTGGCACTGGCGGCCTGTTATGTCTGAACCCCACTGCCAAGCTCTGTGTCCAATCTCTA
GCAGCTGATGCTGCAGGACAGGACTTTCTGGGGTACAAGGCAAGGGAGTAATCTGATACACTGCCTGGAACTGAGCCCTC
ACCTGCTTGCACTGAATTTTATCATTGTTTCTTTTGGCAAAAAAGAGCGCATAGTTGTCTGCCCAAGTGAGGGTGACGGA
CACTGACTTTGCTGGTGAGGAAGTCAGAGAACTTGAAGGCCCTCCAAAGCCAGAAGAAATGCAGGAGATATTGTTTATAT
CCACGGAGAGGGCTGGGCCCTGGCAAGGGTAAAAGTCAGGTATTCTGAGGAGCCCTGGACAGCGATGGCTGAGGAACTGA
ATGCTGTCATTGTCTCCACTGAATACGGCTAGTCCCAAAGGCTTATTTTCCTGAGCAAATTCACAATGTTGTATGTGCCG
CAAAGCATTTCCTGCAGCCAAAAGACTTAGGGAAGTAAATGGTGGATTCAGGCAGCATTTGCATTTCTGGTGGCAGTGCT
GGTGGAAATTTAGCCACTGCCCTCAGACAGCAGCTTAATCAAGACACCAACCTAAAAAAATAAGCTCAAACTGCAAGTCT
TAATTTATCCAGCCCTTCAATATTTAGAT
ORF - retro_ogar_1939 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 68.86 % |
| Parental protein coverage: | 54.9 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | CVLLAALAALAAYYVYIPLPGSVSDPWKLMLLDATFRGAQQVSNLIHYLGLSHHLLALNFIIVSFGKK-T |
| C.LL....ALAA.YV..PLP.SVS....LML.D.TF.G..Q.SNLIH.L.LS.HLLALNFIIVSFGKK.. | |
| Retrocopy | CLLLPVWVALAACYV*TPLPSSVSNL*QLMLQDRTFWGTRQGSNLIHCLELSPHLLALNFIIVSFGKK>S |
| Parental | AWSSAQVKVTDTEFDGVEVRVFEGPRKPEEPLQR-SVVYVHGGGWALASAKIRYYDELCTVMAEELNAVI |
| A..SAQV.VTDT.F.G.EVR..EGP.KP.E..Q....VY.HG.GWALA..K.RY..E..T.MAEELNAVI | |
| Retrocopy | A*LSAQVRVTDTDFAGEEVRELEGPPKP-EEMQE<DIVYIHGEGWALARVKVRYSEEPWTAMAEELNAVI |
| Parental | VSIEY-RLVPKVYFPEQIHDVVRATKHFLQPEILQKYMVDPGRICISGDSAGGNLAAALAQQFNQDANL- |
| VS.EY.RLVPK.YFPEQIH.VV.A.KHFLQP..L.K.MVD.G.ICISG.SAGGNLA.AL.QQ.NQD.NL. | |
| Retrocopy | VSTEY<RLVPKAYFPEQIHNVVCAAKHFLQPKDLGK*MVDSGSICISGGSAGGNLATALRQQLNQDTNL> |
| Parental | KNKLKLQALIYPVLQALD |
| KNKLKLQ.LIYP.LQ.LD | |
| Retrocopy | KNKLKLQVLIYPALQYLD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1939 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000000976 | 1 retrocopy |
retro_ogar_1939 ,
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