RetrogeneDB ID: retro_ogar_1926

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873574.1:3619783..3620119(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ATP6V1G2-DDX39B
• Ensembl ID: ENSOGAG00000032085
• Aliases: None
• Description: ATP6V1G2-DDX39B readthrough (NMD candidate) [Source:HGNC Symbol;Acc:41999]

Sequence

>retro_ogar_1926
CAGGGTATCCAGCAGTTCTGCAAGCTGAGAAGTGAATGGCTGAGAAGGTGGCAGGTGCCAGGAAGAGGAAGGCCGGGCAA
CTGAAGTGGGCAAAGGAGGAGGCACAGATGGAGGCAGTGCAATACTGCAGAGACAGCAAGAATTCCAGAGTAAGCAGCAG
GCAGCCATGGGCTTCCTAGGAAACCTGTCTAGCTGAGATGGATCAGGCTACCAGGCTCCAGGTGGAGGAGCTCTCCAGAG
CTCCCAGCAGAGAAACCAAGAGCAGGTCCTGCCCAACCTCTTAGCATGGTCTGCGACATCAGGTCTCAGGTCCACCCCAA
CTACAGGACTGCTGCC

Alignment

ORF - retro_ogar_1926 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.97 %
• Parental protein coverage: 95.76 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  QGIQQ-LLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREQEFQSKQQAAMGSQGNLSAEVE
          QGIQQ..LQAEK..AEKVA.ARKRKA..LK.AKEEAQME..QY.R.......S..Q....S.....AE..
Retrocopy QGIQQ<VLQAEK*MAEKVAGARKRKAGQLKWAKEEAQMEAVQYCRDSKNSRVSSRQ-PWAS*ETCLAEMD

Parental  QATRRQVQ-GMQSSQQ-RNRERVL-AQLLGMVCDVRPQVHPNYRIPA
          QATR.QV..G...S.Q.RN.E.VL.AQ.L.MVCD.R.QVHPNYR..A
Retrocopy QATRLQVE<GALQSSQQRNQEQVL<AQPLSMVCDIRSQVHPNYRTAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1926 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000008277	1 retrocopy	retro_meug_2002,
Otolemur garnettii	ENSOGAG00000010103	3 retrocopies	retro_ogar_1824, retro_ogar_2822, retro_ogar_342,
Otolemur garnettii	ENSOGAG00000032085	1 retrocopy	retro_ogar_1926 ,