RetrogeneDB ID: retro_ogar_1747

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873563.1:7760245..7760707(-)
• Located in intron of: ENSOGAG00000012638

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RBKS
• Ensembl ID: ENSOGAG00000000511
• Aliases: None
• Description: ribokinase [Source:HGNC Symbol;Acc:30325]

Sequence

>retro_ogar_1747
AGCAATGGAGTGAAAACATTGTTCAACCCAGCTCCTGCCATTGCTCACCTGGATCCTCAGTTCTACACCCTCTCAGATGT
GTTCTGCTGCAATGAAAGTGAAGCTGAGATTTTAACTGGCCACATGGTGGGCAGCACTGCGGATACTGGAGAGGCTGCAT
TAGTGCTCCTGGAAAGGGGCTGCCAGGTGGTAATCATCACCTTAGGAGCTGAAGGATGTGTGATGCTCACACAGACAGAA
CCTGTCCCCAAGCACATTCCCACAGAGAAAGTCAAGGCTGTGGATACCACGGGTGCTGGTAACAGCTTCGTGGGAGCTTT
GGCCTTCTACCTGGCTTACTACCCCAATTTGCCATTGGAAGAAATGCTTGAGAGATCCAATTTCATCGCAGCAATCAGTA
TCCAGGCTACAGGGACACAATAATCTTATCCATACAAAAAAGACCTTCCACTTTCTCTATTT

Alignment

ORF - retro_ogar_1747 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.86 %
• Parental protein coverage: 61.35 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SNGVKTLFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGHMVGSPADAGEAASVLLERGCQVVIITLGA
          SNGVKTLFNPAPAIA.LDPQFYTLSDVFCCNESEAEILTGHMVGS.AD.GEAA.VLLERGCQVVIITLGA
Retrocopy SNGVKTLFNPAPAIAHLDPQFYTLSDVFCCNESEAEILTGHMVGSTADTGEAALVLLERGCQVVIITLGA

Parental  EGCVMLSQTEPVPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLPLEEMLKRSNFIAAVSVQATGTQ
          EGCVML.QTEPVPKHIPTEKVKAVDTTGAG.SFVGALAFYLAYYPNLPLEEML.RSNFIAA.S.QATGTQ
Retrocopy EGCVMLTQTEPVPKHIPTEKVKAVDTTGAGNSFVGALAFYLAYYPNLPLEEMLERSNFIAAISIQATGTQ

Parental  SSYPYKKDLPVSLF
          .SYPYKKDLP.SLF
Retrocopy *SYPYKKDLPLSLF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1747 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000015586	1 retrocopy	retro_mdom_533,
Otolemur garnettii	ENSOGAG00000000511	1 retrocopy	retro_ogar_1747 ,