RetrogeneDB ID: retro_ogar_1706

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873562.1:9321486..9321849(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000034759
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: LZIC
• Ensembl ID: ENSOGAG00000001446
• Aliases: None
• Description: leucine zipper and CTNNBIP1 domain containing [Source:HGNC Symbol;Acc:17497]

Sequence

>retro_ogar_1706
CTGATAGATGAACTAAGTGCAATGCAGTTGGCCATTCAAGTAGCTATCAGCCAGGTCTTTAAAACCCCAGAGGTCATCAG
ATTATTTGCAAAGAGACAGCCAGGTCAGCTTCGGACAAGGTTAGCAGAGATGGATAGAGATTTAATGGTAGGAAAATTGG
AAAGTGACCTTTATACACAACAGAAAGTGGAGATACTGACAGCTCTCGGGAAACTTGGAAAGAAGCTGACTACAGACGAT
GAGGCCTTCTTGTCAGCAAATGTAGGTGCTATCCTCAGCCAGTTTGAGAAAGTTCCTACAGACCTTGGCTCTGGATACAA
AGTCATTGCTCTGGCAAGTTTTGAGGTTGAAAAAACAAAACAA

Alignment

ORF - retro_ogar_1706 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.43 %
• Parental protein coverage: 77.07 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LVDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVGKLERDLYTQQKVEILTALR
          L.DELS.MQLAIQ.AISQ.FKTPEVIRLFAK.QPGQLRTRLAEMDRDLMVGKLE.DLYTQQKVEILTAL.
Retrocopy LIDELSAMQLAIQVAISQVFKTPEVIRLFAKRQPGQLRTRLAEMDRDLMVGKLESDLYTQQKVEILTALG

Parental  KLGEKLTADDEAFLSANAGAILSQFEKVSTDLGSGDKVLALASFEVEKTKK
          KLG.KLT.DDEAFLSAN.GAILSQFEKV.TDLGSG.KV.ALASFEVEKTK.
Retrocopy KLGKKLTTDDEAFLSANVGAILSQFEKVPTDLGSGYKVIALASFEVEKTKQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1706 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000019688	1 retrocopy	retro_dnov_2506,
Echinops telfairi	ENSETEG00000011633	1 retrocopy	retro_etel_686,
Otolemur garnettii	ENSOGAG00000001446	1 retrocopy	retro_ogar_1706 ,