RetrogeneDB ID: retro_ogar_1602

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873555.1:6230880..6231158(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000005808
• Aliases: None
• Description: None

Sequence

>retro_ogar_1602
TCTGTGCTCACCCAGGCTGAGGTGCCTTCCTGGCCTCCCTGATTGAGGAAGGCTGCACTGGTGACTGCAGCATCTGGACT
GGCCTCCGTGACCCCAACAAGAACAGCCGTTGGCACTGGACCAGTGGGTCCCTGGTTTCCTACAAATTCTGGGACACTGG
AGCCTCAGGTAATTCCAGTCCCGGCTGCTGTGCCAGCCTGACTTCAAGCTCAGGATACAGGAAATGGAAGGATGAGAGTT
GTGAGGCAGAGTTCTCCTTTGTCTGCAAGTTCAGAAAC

Alignment

ORF - retro_ogar_1602 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.53 %
• Parental protein coverage: 56.02 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SVLTQAE-GAFVASLIKESSTGDCNVWTGLHDPKKNRRWHWSSGSLVSYKSWDTGAPSSSNPGYCASLTS
          SVLTQAE.GAF.ASLI.E..TGDC..WTGL.DP.KN.RWHW.SGSLVSYK.WDTGA...S.PG.CASLTS
Retrocopy SVLTQAE<GAFLASLIEEGCTGDCSIWTGLRDPNKNSRWHWTSGSLVSYKFWDTGASGNSSPGCCASLTS

Parental  RSGYKKWKDENCESTFSFVCKFKN
          .SGY.KWKDE.CE..FSFVCKF.N
Retrocopy SSGYRKWKDESCEAEFSFVCKFRN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1602 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macaca mulatta	ENSMMUG00000000991	1 retrocopy	retro_mmul_1034,
Otolemur garnettii	ENSOGAG00000005808	1 retrocopy	retro_ogar_1602 ,