RetrogeneDB ID: | retro_ogar_1556 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873551.1:14528353..14529046(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSOGAG00000029460 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | HSF2BP | ||
| Ensembl ID: | ENSOGAG00000009866 | ||
| Aliases: | None | ||
| Description: | heat shock transcription factor 2 binding protein [Source:HGNC Symbol;Acc:5226] |
Retrocopy-Parental alignment summary:
>retro_ogar_1556
ATGGGCGAGGCCGGTGGCGCGGAGGACGACTGCCGGCCCATGGGAACTAAAGAAGAATTTGTTAAAGTCAGAAAGAAGGA
CCTGGAACGGCTGACAACTGAAGTGATACAAATTCGGGACTTCTTACCGAGAATACTAAATGGGGAAGTTCTGGAAAGCT
TCCAGAAATTAAAGATTGTAGAAAAAAACCTGGAAAGGAAAGAGCAAGAATTAGAGCATCTGAAAATGGATTGTGAACAC
TTTAAATCCCGTCTGGAAACCGTGCAGGCTGACAGCATGAGAGAGAAGAAGGAGAAACTCATTCTTAGACAGCAGCTGAA
TGAAGCGAAGCAGCAACTCCTACAGCAGGCAGAGTATTGTACAGAAATGGGAGCAGCAGCGTGTACCCTCTTGTGGGGTG
TCTCCAGCAGCGAGGAAGTTGTCAAAGCCATTTTGGAAGGAGATAAAGCTTTGAAGTTTTTCAACATCACTGGTCAGACA
ATGGAGAGTTTTGTGAAGTCACTGGATGGTGATGTTAAGGAGCTCAACTCAGATGAAAATCAGTTTGTTTTTGCTTTGGC
TGGAATTGTAACAAATGTTGCTGCCATTGCATGTGGTCGTGAATTCCTGGTTAACTCCAGTCGAGTGCTCTTGGATACCA
TATTGCAGCTCTTGGGAGACTTGAAGCCAGGACAGTGCACCAAACTCAAAGTG
ORF - retro_ogar_1556 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 99.57 % |
| Parental protein coverage: | 69.16 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MGEAGGAEDDCRPMGTKEEFVKVRKKDLERLTTEVMQIRDFLPRILNGEVLESFQKLKIVEKNLERKEQE |
| MGEAGGAEDDCRPMGTKEEFVKVRKKDLERLTTEV.QIRDFLPRILNGEVLESFQKLKIVEKNLERKEQE | |
| Retrocopy | MGEAGGAEDDCRPMGTKEEFVKVRKKDLERLTTEVIQIRDFLPRILNGEVLESFQKLKIVEKNLERKEQE |
| Parental | LEHLKMDCEHFKSRLETVQADSMREKKEKLILRQQLNEAKQQLLQQAEYCTEMGAAACTLLWGVSSSEEV |
| LEHLKMDCEHFKSRLETVQADSMREKKEKLILRQQLNEAKQQLLQQAEYCTEMGAAACTLLWGVSSSEEV | |
| Retrocopy | LEHLKMDCEHFKSRLETVQADSMREKKEKLILRQQLNEAKQQLLQQAEYCTEMGAAACTLLWGVSSSEEV |
| Parental | VKAILEGDKALKFFNITGQTMESFVKSLDGDVKELNSDENQFVFALAGIVTNVAAIACGREFLVNSSRVL |
| VKAILEGDKALKFFNITGQTMESFVKSLDGDVKELNSDENQFVFALAGIVTNVAAIACGREFLVNSSRVL | |
| Retrocopy | VKAILEGDKALKFFNITGQTMESFVKSLDGDVKELNSDENQFVFALAGIVTNVAAIACGREFLVNSSRVL |
| Parental | LDTILQLLGDLKPGQCTKLKV |
| LDTILQLLGDLKPGQCTKLKV | |
| Retrocopy | LDTILQLLGDLKPGQCTKLKV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1556 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000009866 | 1 retrocopy |
retro_ogar_1556 ,
|
| Sus scrofa | ENSSSCG00000022164 | 1 retrocopy | |
| Ictidomys tridecemlineatus | ENSSTOG00000011783 | 1 retrocopy |