RetrogeneDB ID: | retro_ogar_1555 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873551.1:13152662..13153068(+) | ||
| Located in intron of: | ENSOGAG00000004342 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | UBTD2 | ||
| Ensembl ID: | ENSOGAG00000011997 | ||
| Aliases: | None | ||
| Description: | ubiquitin domain containing 2 [Source:HGNC Symbol;Acc:24463] |
Retrocopy-Parental alignment summary:
>retro_ogar_1555
GGGCAGATGGTCAGGCACCAGAAAGACTCCTTGGGCAGTCTCAATAAACATTTAGAAGACACTGGAGTTTGTGGTAGCTG
GTAACTAGTCTTTAACAAAAAAGAAACCAAAATGGGAAAGTAATTATCCCTTGACAGATAGACAACTGGGTGGTAAGAGG
GATGAGTTTTGGGATACTGCACCAGATTTTGAAGGCTGTAAAGAGATTTGGCATGCCTCGGAGGCTGCTGCTCATGCTTG
TGGAAGCAATGATGGTGAACTGGCAGGAGCAATCCGTGATGGTACAAACGTGACGTGACCGCATGGATCCCTGGCAGAGT
GCTGAGGAGAGCCGGGGAGCAGACAGCCTCTGGTCTACTGCTTGGCACCACTACTCAGTGTGACAGAGTGGCATAGTGAC
TCTGAA
ORF - retro_ogar_1555 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 59.42 % |
| Parental protein coverage: | 58.3 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | GGCVGAQHDSSGSLNENSEGTGVA-LGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEI |
| G..V..Q.DS.GSLN...E.TGV.....N..L.K.KPKW.S.YP.TD.QL..KRDEFWDTAP.FEG.KEI | |
| Retrocopy | GQMVRHQKDSLGSLNKHLEDTGVC>VAGN*SLTKKKPKWESNYPLTDRQLGGKRDEFWDTAPDFEGCKEI |
| Parental | WDALKAAAHAFESNDHELAQAIIDGANITLPHEGALTECYDELGNRYQLPVYCLAPPINMIEEKSDIE |
| W.A..AAAHA..SND.ELA.AI.DG.N.T.PH.G.L.EC..E.G.R..L.VYCLAP.....E..SD.E | |
| Retrocopy | WHASEAAAHACGSNDGELAGAIRDGTNVT*PH-GSLAEC*GEPGSRQPL-VYCLAPLLSVTEWHSDSE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1555 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000011997 | 1 retrocopy |
retro_ogar_1555 ,
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