RetrogeneDB ID: retro_ogar_1505

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873550.1:466306..466582(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TSC22D3
• Ensembl ID: ENSOGAG00000032050
• Aliases: None
• Description: TSC22 domain family, member 3 [Source:HGNC Symbol;Acc:3051]

Sequence

>retro_ogar_1505
ATAGGCAACTCCACAGACGAGGTCTGACTCACTTAAACCTCCTCCGGTACAAGTATGGTAGCTACTGACAACAAAACCAA
AGAAGCTACGGATCTGGTGAAAAGCCACTTGATGTATGTGGTTATAGAGAAAGTGGAGGTCCTGAAAGAGCAATTCAAAG
AACTAATAGAGAAAAATTCCCAGTTGGAGCAGGAAAACAATCTACAGAGGAGACTGGCCAGTCCTGAGCAGCTGACCCAG
TTTCAGGCCCAACTGCAGACTGGTTTCCCCTTTGCT

Alignment

ORF - retro_ogar_1505 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.61 %
• Parental protein coverage: 68.66 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LGGDVVSVKLDNSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEVLKEQIRELVEKNSQLERENTLLK
          .G.....V.L....SG.S.VA.DNK...A.DLVK.HLMY.V.E.VEVLKEQ..EL.EKNSQLE.EN.L..
Retrocopy IGNSTDEV*LT*TSSGTSMVATDNKTKEATDLVKSHLMYVVIEKVEVLKEQFKELIEKNSQLEQENNLQR

Parental  TLASPEQLEKFQSRLSPEEPAA
          .LASPEQL..FQ..L....P.A
Retrocopy RLASPEQLTQFQAQLQTGFPFA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1505 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000022573	1 retrocopy	retro_fcat_432,
Mustela putorius furo	ENSMPUG00000001671	1 retrocopy	retro_mputfur_887,
Otolemur garnettii	ENSOGAG00000032050	1 retrocopy	retro_ogar_1505 ,