RetrogeneDB ID: retro_ogar_1473

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873548.1:3707340..3708488(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BFSP1
• Ensembl ID: ENSOGAG00000000601
• Aliases: None
• Description: beaded filament structural protein 1, filensin [Source:HGNC Symbol;Acc:1040]

Sequence

>retro_ogar_1473
GAGAGACAGGGGACCATGGAGAAGCCCTCCTACGACTGCCGGTGGCTGGAGGTGGCACAGCAAAAGCTGAAGAATGAGCT
GGACCGTTATCATCGGATCATTGAGATTGAAGGCAACAGGCTGAGCTCTGCCTTCATTGAAACCCCCATTCCCTTGTTCA
CCTCGAGCCATGGATCCTCTTTCAGCTCTGGAGCTGGTGGAAAAGATCTTACTAGGGCTGTACAGGACATAACAACAGCA
AAACCAAGACAAAAAGGCTCCCCCAAGACTGTCCTAAGGAGAAAGAAGATTATGGCCAGAGACAAAGCGGATGGACCTTT
GGAAGACCCACCATCAAAAGGTCTGGAAGATGCAAAGATGGTGCGGGTGGTGCTTAAAGAGGAAGGTGAATCTAAGCTTG
AACCGGAGGGTAAAGTAGCAAGTCTCCTAGCACAAGAAGGGGACCCAGAGGATGTGCCAGATGGAGGGCAAATAAGCAAA
GCCTTTGGGAAGCTGTACAAGATGGTCAAGGAGAAAGTGAAAAGCCCCAGAGAGCCGGAGCCACCTGTTGACCTCTTCAC
CAAAGGTCAGCATGTGCTGGTCACAGGGGATGCCAGTTACGTGGACCCTGAGTTCTATGTGTCTTCCATCCCCACCAAAG
GTGGGGTGGTTGTTTCCATTGAGGAAGAGTCTGTGACTCCTGAGGACCATGGAGAACCCCCTCCTGAGCAGTCTGAGCCC
CCTCAGGAGAACGGGGAGGAAGTCCCCGAGGGGAGAGAAGATGAACAACCCAGCATCCAGCCGACTGCAGACAAGGAGGC
TGAGATGAGTGCTGAAGAACTGAAGGGCCTAGAGCAGAAAGAGGATGTCGAGGAGGAGGGTGAGGGACCCCGGCACCCTG
TCCCACAGTCATACCTGGTCCAGAGGAACCGTCTACCCCCCAGGCTCAAAGGCCTGGGGCTGTTCAGGATGGATTGGAGG
GAACTAGGAGAAAAAGCCCAGAGAAAAGCCCTCCCAAGCCTGTGGTTAATCAGAAGGTGGAAGTGGTGGAATCCATTGAG
ACAGTTTCCACAGAGAGCACTGAGACATACGAAGAAACCGCTGTCATTGTGGAGACCGTGGTTGGAAAGGCAAAAGCAAA
CAAGAAGAAATCAGGAGAGAAGGGCTCT

Alignment

ORF - retro_ogar_1473 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.41 %
• Parental protein coverage: 57.77 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ETERTLEKSSYDCRQLAVAQQTLKNELDRYHRIIEVEGNRLSSAFIEMPIPLFTSSHGASFSSGAGGKDL
          E...T.EK.SYDCR.L.VAQQ.LKNELDRYHRIIE.EGNRLSSAFIE.PIPLFTSSHG.SFSSGAGGKDL
Retrocopy ERQGTMEKPSYDCRWLEVAQQKLKNELDRYHRIIEIEGNRLSSAFIETPIPLFTSSHGSSFSSGAGGKDL

Parental  TRAVQDITTAKPRQKGLPKTVPRRKEIMAKDKADGPLEDPPSKGLEDAKMVRVVLKEEGESKLEPEGKGA
          TRAVQDITTAKPRQKG.PKTV.RRK.IMA.DKADGPLEDPPSKGLEDAKMVRVVLKEEGESKLEPEGK.A
Retrocopy TRAVQDITTAKPRQKGSPKTVLRRKKIMARDKADGPLEDPPSKGLEDAKMVRVVLKEEGESKLEPEGKVA

Parental  SLLAQEGDPEDVPDGGQISKAFGKLYKMVKEKVKSPREPEPPVDLFTKGRHVLVTGDASYVDPEFYVSSI
          SLLAQEGDPEDVPDGGQISKAFGKLYKMVKEKVKSPREPEPPVDLFTKG.HVLVTGDASYVDPEFYVSSI
Retrocopy SLLAQEGDPEDVPDGGQISKAFGKLYKMVKEKVKSPREPEPPVDLFTKGQHVLVTGDASYVDPEFYVSSI

Parental  PAKGGVVVSIEEESVPPEDRGEPPPEQPEPPQENGEEVPEGREVEQPSIQPTADKEAEISAEDLKGLEEK
          P.KGGVVVSIEEESV.PED.GEPPPEQ.EPPQENGEEVPEGRE.EQPSIQPTADKEAE.SAE.LKGLE.K
Retrocopy PTKGGVVVSIEEESVTPEDHGEPPPEQSEPPQENGEEVPEGREDEQPSIQPTADKEAEMSAEELKGLEQK

Parental  EDVEKEGEGP-PAPCPTVIPGPEEPSTPQAQRPVAIQDGLEGTRRKSPEKSPPKPVAYQKVEVVESIETI
          EDVE.EGEGP.PAPCPTVIPGPEEPSTPQAQRP.A.QDGLEGTRRKSPEKSPPKPV..QKVEVVESIET.
Retrocopy EDVEEEGEGP<PAPCPTVIPGPEEPSTPQAQRPGAVQDGLEGTRRKSPEKSPPKPVVNQKVEVVESIETV

Parental  STESIETYEETAVIVETVVGKAKANKKKSGEKGS
          STES.ETYEETAVIVETVVGKAKANKKKSGEKGS
Retrocopy STESTETYEETAVIVETVVGKAKANKKKSGEKGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1473 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000000601	1 retrocopy	retro_ogar_1473 ,