RetrogeneDB ID: | retro_ogar_1452 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873547.1:16694086..16694293(-) | ||
| Located in intron of: | ENSOGAG00000010322 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSOGAG00000010662 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ogar_1452
CTGACCGGGAAGGAGATTGACATTGACATTGAGCCCGCAGACTAGGTGGAGCGAATCAAGGAGTGTGTAGAGGAGGAAGA
GGGAATCACCCCACAACAGTAGCAGCTCATCTGCAGTGGCAAACAAATGAATGATGAAAAGACTGCAGCTGACTACAAAT
CCTAGGGGGGTTCAGTCCTCCACCTGGTATTGGCTGTGAGAGGAGGA
ORF - retro_ogar_1452 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 82.61 % |
| Parental protein coverage: | 84.15 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG |
| LTGKEI.IDIEP.D.VERIKE.VEE.EGI.PQQ..LI.SGKQMNDEKTAADYK..GGSVLHLVLA.RGG | |
| Retrocopy | LTGKEIDIDIEPAD*VERIKECVEEEEGITPQQ*QLICSGKQMNDEKTAADYKS*GGSVLHLVLAVRGG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1452 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000010662 | 2 retrocopies |
retro_ogar_1369, retro_ogar_1452 ,
|