RetrogeneDB ID: retro_ogar_1279

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873541.1:12021007..12021525(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000007294
• Aliases: None
• Description: None

Sequence

>retro_ogar_1279
CCAGTATTAGAACTCGAACTGGCAGAGAAGAAATTACCTATGACTCTTTCTAGGCAAGAGGTAATCAGAAGATCGAGAGA
AAGAAGAGAACCAATCAGACTGCTTGGGGAAACCAATTATGATGCTTTTCAATGTTTAAGATAAATAGAGGTCCTCACAC
CAGAAGTTAACAAGGGATTGAGGAATGACCTGAAAGCAGCTTTGGATAATATTGATCAGCAGTACCTTAATGAAATCGTG
GGTGGTCAGGAACCTGGAGAGGAAGACACACAGAATGATTTGAAAGTTCATGAAGAAAACACACAATCAAAGAGTTAGAG
GCCCTGGGAGAGTCCGTAGGGAAGAGTGATGACCGTAAAGACATGGACATCATCACCAAGTTCCTGAAGTTTCTTCTCGG
TGTCTGGGCTAAAGAATTGAATGCCAGAGAAGATTATGTGAAACACAGTGTGCAGGGTAAACTGAACGGCGCCACTCAGA
AGCAGACTGAGTCCTCCCTCAGACCACTCTTCAGAAAG

Alignment

ORF - retro_ogar_1279 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.23 %
• Parental protein coverage: 50.58 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDK
          PVLELELAE.KLPMTLSRQEVIRR.RER.EPIRL.GET.YDAFQ.LR.IE.LTPEVNKGLRNDLKAALD.
Retrocopy PVLELELAEKKLPMTLSRQEVIRRSRERREPIRLLGETNYDAFQCLR*IEVLTPEVNKGLRNDLKAALDN

Parental  IDQQYLNEIVGGQEPGEEDTQNDLKVHEENT-TIEELEALGESLGKGDDHKDMDIITKFLKFLLGVWAKE
          IDQQYLNEIVGGQEPGEEDTQNDLKVHEENT.TI.ELEALGES.GK.DD.KDMDIITKFLKFLLGVWAKE
Retrocopy IDQQYLNEIVGGQEPGEEDTQNDLKVHEENT<TIKELEALGESVGKSDDRKDMDIITKFLKFLLGVWAKE

Parental  LNAREDYVKRSVQGKLNSATQKQTESYLRPLFRK
          LNAREDYVK.SVQGKLN.ATQKQTES.LRPLFRK
Retrocopy LNAREDYVKHSVQGKLNGATQKQTESSLRPLFRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1279 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000016902	1 retrocopy	retro_mdom_166,
Otolemur garnettii	ENSOGAG00000007294	1 retrocopy	retro_ogar_1279 ,
Sarcophilus harrisii	ENSSHAG00000016463	1 retrocopy	retro_shar_77,