RetrogeneDB ID: retro_ogar_1187

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873538.1:21606443..21606732(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000008215
• Aliases: None
• Description: None

Sequence

>retro_ogar_1187
AGTGGAAGTTCTGTCACTGGATCTGGTTTCAGTGTCTCAGACCTCTCCCACCACGGAAAGCACTTTTCACCTACCCCAAA
GGAGCCGGAGAGATGATAGAAGAGGGCTCTGAGGGATTCCTCTGCGAATCTGTTTTCAGCTATCAAGTGGCATTCACGCT
TAACCAGGGGAAACATGATCAGCAAGTTGCTCAGATGGAAAAACTAGCTGGTTTGGTAGAAGAGCTGGAGGCTGACGAGT
GGTGGTTTAAGCCTATCGATCAGCTGCTCCGGTCACACCCTCTAAAGGT

Alignment

ORF - retro_ogar_1187 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.85 %
• Parental protein coverage: 88.18 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SGSSVTGSGFSVSDLA-PPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKL
          SGSSVTGSGFSVSDL..PPRKALFTYPKGAGEM.E.GSE.FLCESVFSYQVA.TL.Q.KHDQQVA.MEKL
Retrocopy SGSSVTGSGFSVSDLS<PPRKALFTYPKGAGEMIEEGSEGFLCESVFSYQVAFTLNQGKHDQQVAQMEKL

Parental  AGLVEELEADEWRFKPIEQLL-GFTPSSG
          AGLVEELEADEW.FKPI.QLL...TPS.G
Retrocopy AGLVEELEADEWWFKPIDQLL<PVTPSKG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1187 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000014902	1 retrocopy	retro_eeur_78,
Felis catus	ENSFCAG00000010368	1 retrocopy	retro_fcat_390,
Microcebus murinus	ENSMICG00000004229	1 retrocopy	retro_mmur_2,
Oryctolagus cuniculus	ENSOCUG00000016767	1 retrocopy	retro_ocun_1674,
Otolemur garnettii	ENSOGAG00000008215	3 retrocopies	retro_ogar_1022, retro_ogar_1187 , retro_ogar_135,