RetrogeneDB ID: | retro_ogar_1009 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873533.1:4489166..4489931(-) | ||
| Located in intron of: | ENSOGAG00000013396 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ACMSD | ||
| Ensembl ID: | ENSOGAG00000001854 | ||
| Aliases: | None | ||
| Description: | aminocarboxymuconate semialdehyde decarboxylase [Source:HGNC Symbol;Acc:19288] |
Retrocopy-Parental alignment summary:
>retro_ogar_1009
AAACCTCAGGACACTTTAAACTGGTGCCAGCTTTTAAACAATGACCTAGGTGCCATCACTGCAACCACCCAGGAAGTTTG
TAGGCCTGGGAATGCTGCCCATGCAGGGCCCCAGTTGGTCACTGAGGAGATGGAGTGCTATCTGAAGGAGCTGGGCTTTC
CTGGGATCCAGATCGGCTCTCACATCAACCAGTGGGATCTGAACTCACAGGAACACTTCCCTGTCTACCAGGCGGCTGAA
TGGCTGAACTGTTCCCTATTTGTGCATCCCTAGGATATGTGGTTGGACGGCTCATGGCCAAATACTGGCTTCCTTGGCTC
ATAGAAATGCCAACAGAGAACACCATAGCCATTTGCTCCACAATCACAGGTTGAGTGTTTGAGAAATTTCCTGAACTATT
AAGTGTGTTTTGCATAGGGAGGTGGTGCCTTCGCCTTCACACTGGGAAGAATCTCTCATGGATTTAGCATGAGGCCAGAT
CTGTGTGCCCAGGACAATCCAGTTAACCCAAAGAAATATCTTGGTTCCTTTTAAATGGACCTCTTGGTTCATAATCCTCT
GTCCCTCAAGCTAGAGGACAGAGCATTAACGAATGTCACAGGAAAAGATAAAGTCATTTTGGGAACTGACTACCCCTTCC
CCCTAGGTGAGCTGGAACCCAGGTAACTGAGAGAATTCATGGAAGAATTTGATGAAGAAACAAAGGATAAATTTAAAGCT
AGCAATGCCCTGGAATTTTGGGGTCTTGAGAGAAAAAACATTGAA
ORF - retro_ogar_1009 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 75.48 % |
| Parental protein coverage: | 75.0 % |
| Number of stop codons detected: | 5 |
| Number of frameshifts detected: | 5 |
Retrocopy - Parental Gene Alignment:
| Parental | KPQDTLSLCQLLNNDLAATVA-SHP-RRFVGLGTLPMQ-APELAIEEMERCVKELGFPGVQIGSHINEWD |
| KPQDTL..CQLLNNDL.A..A..HP.R.FVGLG.LPMQ..P.L..EEME...KELGFPG.QIGSHIN.WD | |
| Retrocopy | KPQDTLNWCQLLNNDLGAITA<NHP<RKFVGLGMLPMQ<GPQLVTEEMECYLKELGFPGIQIGSHINQWD |
| Parental | LNARELFPVYAAAERLNCSLFVHPWDMQMDGR-MAKYWFPWLVGMPTETTIAVGSMIMGGVFEKFPKLK- |
| LN..E.FPVY.AAE.LNCSLFVHP.DM..DG..MAKYW.PWL..MPTE.TIA..S.I.G.VFEKFP.L.. | |
| Retrocopy | LNSQEHFPVYQAAEWLNCSLFVHP*DMWLDGS<MAKYWLPWLIEMPTENTIAICSTITG*VFEKFPELL> |
| Parental | VCFAHGGGAFAFTVGRISHGFSMRPDLCAQDNPINPKKYLGSFYTDSLVHDPLSLKL----LTDVIGKDK |
| VCFA.GGGAFAFT.GRISHGFSMRPDLCAQDNP.NPKKYLGSF..D.LVH.PLSLKL....LT.V.GKDK | |
| Retrocopy | VCFA*GGGAFAFTLGRISHGFSMRPDLCAQDNPVNPKKYLGSF*MDLLVHNPLSLKLEDRALTNVTGKDK |
| Parental | VILGTDYPFPLGELEPGKLIESMEEFDEETKDKLKAGNALEFLGLERKQFE |
| VILGTDYPFPLGELEP..L.E.MEEFDEETKDK.KA.NALEF.GLERK..E | |
| Retrocopy | VILGTDYPFPLGELEPR*LREFMEEFDEETKDKFKASNALEFWGLERKNIE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1009 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000001854 | 1 retrocopy |
retro_ogar_1009 ,
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