RetrogeneDB ID: retro_ogar_1006

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873533.1:30142515..30145653(+)
• Located in intron of: ENSOGAG00000000595

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OGT
• Ensembl ID: ENSOGAG00000007524
• Aliases: None
• Description: O-linked N-acetylglucosamine (GlcNAc) transferase [Source:HGNC Symbol;Acc:8127]

Sequence

>retro_ogar_1006
ATGGCGTCTTCGGTGGGCAACGTGGCCGACAGCGCAGAATCAACGAAACGTATGCTTTCCTTCCAAGGGTTAGCTGAGTT
GGCACATCGAGAATATCAGGCAGGAGATTTTGAAGCAGCTGAGAGACACTGCATGCAGCTCTGGAGACAAGAGCCAGACA
ATACCGGTGTGCTTTTATTACTTTCATCTATACACTTCCAGTGTCGAAGGCTGGACAGATCTGCTCACTTTAGCACTCTG
GCAATTAAACACAACCCCCTTCTGGCAGAAGCCTATTCGAATTTGGGAAACGTATATAAGGAAAGAGGGCAGTTGCAAGA
AGCAAATGAACATTATCGACATGCATTGCGTCTCAAACCTGATTTCATCGATGGTTATATTAACCTGGCAGCCGCCTTGG
TAGCAGCAGGTGACATGGAAGGGGCTGTACAAGCTTATATCTCTGCTCTTCAGTACAATCCCGATTTGTACTGTGTTCGC
AGTGACCTGGGAAACCTGCTCAAAGCCCTGGGTCGCTTGGAAGAAGCCAAAGCGTGTTATTTGAAAGCAATTGAAACGCA
ACTGAACTTTGCGGTAGCTTGGAGTAATCTTGGCTGTGTTTTCAATGCACAAGGGGAGATTTGGCTTGCAATTCATCACT
TTGAAAAGGCTGTCACCCTTGACCCAAATTTTCTGGATGCTTATATCAATTTAGGAAATGTCTTGAAAGAGGCCCGCATT
TTTGACAGAGCTGTGGCAGCTTACCTTCGTGCCCTAAGTTTGAGTCCAAATAATGCAGTGGTGCACGGCAACCTCGCTTG
TGTGTACTATGAGCAAGGCCTGATAGATCTGGCAATAGACACCTATAGGCGAGCCATTGAACTTCAACCACATTTCCCTG
ATGCTTACTGCAACCTAGCCAATGCTCTCAAAGAGAAGAGCAGTGTTGCTGAAGCAGAAGATTGTTATAATACAGCTCTC
CGTCTGTGTCCCACCCATGCAGACTCTCTGAATAACCTAGCTAATATCAAACGAGAACAGGGGAACATTGAAGAGGCAGT
TCGCTTATATCATAAAGCACTAGAAGTCTTCCCAGAATTTGCTGCTGCCCATTCAAATTTAGCAAGTGTACTACAGCAGC
AAGGAAAATTACAGGAAGCTCTGATGCATTATAAGGAGGCTATTCGAATCAGTCCTACTTTTGCTGATGCCTACTCTAAT
ATGGGAAACACTCTAAAGGAGATGCAGGATGTTCAGGGAGCCTTGCAGTGTTACACACGTGCCATCCAGATTAACCCTGC
ATTTGCAGATGCCCACAGCAATCTGGCTTCCATTCATAAGGATTCAGGAAATATTCCAGAAGCTATAGCTTCCTACCGCA
CAGCTCTGAAACTTAAGCCTGATTTTCCTGATGCTTACTGTAACTTGGCTCATTGCCTGCAGATTGTCTGTGACTGGACA
GACTATGATGAGCGAATGAAGAAGTTGGTCAGTATTGTGGCTGACCAATTAGAGAAGAACAGATTGCCTTCTGTGCATCC
TCATCATAGTATGCTATATCCTCTTTCTCATGGCTTTAGGAAGGCAATAGCTGAGAGGCATGGAAACCTCTGCCTAGACA
AGATTAAGGTCCTTCATAAACCACCATATGAACATCCAAAAGACTTGAAGCTCAGTGATGGTCGACTTCACGTAGGATAC
GTGAGTTCTGACTTTGGGAATCATCCTACTTCTCACCTTATGCAGTCCATTCCAGGCATGCACAATCCTGATAAATTTAA
GGTATTCTGTTATGCCCTGAGCCCAGATGATGGCACAAACTTCCGAGTGAAGGTGATGGCAGAAGCTAATCATTTCATTG
ATCTTTCTCAGATTCCATGCAATGGAAAAGCAGCTGATCGCATCCATCAGGATGGAATTCATATCCTTGTAAATATGAAT
GGTTATACCAAAGGTGCTCGAAATGAACTTTTTGCCCTCAGGCCAGCTCCTATACAGGCAATGTGGCTGGGATACCCTGG
AACTAGTGGTGCGCTTTTCATGGATTATATCATCACTGATCAGGAAACTTCACCAGCCAAATTTGCTGAGCAGTATTCAG
AGAAATTGGCTTATATGCCCCACACTTTCTTTATTGGTGATCATGCTAGTATGTTTCCTCACTTGAAGAAAAAAGCAGTT
ATCGATTTTAAGTCCAATGGGCACATTTATGACAATCGAATAGTTCTGAATGGCATCGACCTCCAAGCATTTCTTGATAG
TCTGCCAGATGTGAAAATTGTCAAGATGAAATGTCCTGATGGAGGGGATGATGCCGACAGCAGTAACACAGCTCTTAACA
TGCCTGTCATTCCTATGAATACTATTGCAGAAGCAGTTATTGAAATGATTAACAGAGGGCATATTCAGATAACAATTAAT
GGATTCAGTGTTAGCAACGGACTGGCAACTACCCAGATCAACAATAAGGCTGCAACTGGAGAGGAGGTTCCGCGCACCAT
TATTGTAACTACCCGTTCTCAATATGGGTTGCCAGAAGATGCCATTGTGTACTGTAACTTTAATCAGTTGTATAAAATTG
ACCCCTCTACTTTGCAAATGTGGGCAAATATTCTCAAGCGTGTTCCCAATAGTGTACTCTGGCTGTTGCGTTTTCCAGCA
GTAGGGGAACCTAATATTCAACAGTATGCACAAAACATGGGCCTTCCTCAAAACCGTATCATTTTTTCACCGATGGCTCC
TAAAGAAGAACATGTCAGAAGAGGCCAGCTGGCAGACATCTGCTTAGACACTCCACTTTGTAATGGGCACACCACTGGGA
TGGATGTCCTCTGGGCAGGGACACCCATGGTGACTATGCCAGGAGAGACTCTTGCTTCTCGAGTTGCAGCTTCCCAGCTT
ACTTGCTTAGGTTGTCTTGAACTTATTGCTAAGAGTAGACAAGAATATGAAGATATAGCTGTGAAACTGGGAACTGATCT
AGAATATCTGAAGAAAATTCGTGGCAAAGTTTGGAAGCAGAGAATATCTAGCCCTTTGTTCAACACCAAACAATACACAG
TGGAACTAGAACGGCTCTATCTACAGTTATGGGAGCATTATGCAGCTGGCAACAAACCTGACCACATGATTAAGCCTGTT
GAAGTCACTGAGTCAGCC

Alignment

ORF - retro_ogar_1006 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.9 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASSVGNVADSTEPTKRMLSFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR
          MASSVGNVADS.E.TKRMLSFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR
Retrocopy MASSVGNVADSAESTKRMLSFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR

Parental  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME
          LDRSAHFSTLAIK.NPLLAEAYSNLGNVYKERGQLQEA.EHYRHALRLKPDFIDGYINLAAALVAAGDME
Retrocopy LDRSAHFSTLAIKHNPLLAEAYSNLGNVYKERGQLQEANEHYRHALRLKPDFIDGYINLAAALVAAGDME

Parental  GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA
          GAVQAY.SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ.NFAVAWSNLGCVFNAQGEIWLA
Retrocopy GAVQAYISALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQLNFAVAWSNLGCVFNAQGEIWLA

Parental  IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID
          IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN.AVVHGNLACVYYEQGLIDLAID
Retrocopy IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNNAVVHGNLACVYYEQGLIDLAID

Parental  TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY
          TYRRAIELQPHFPDAYCNLANALKEK.SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY
Retrocopy TYRRAIELQPHFPDAYCNLANALKEKSSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY

Parental  RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR
          .KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR
Retrocopy HKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR

Parental  AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV
          AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV
Retrocopy AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV

Parental  SIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGY
          SIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKI.VLHKPPYEHPKDLKLSDGRL.VGY
Retrocopy SIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKIKVLHKPPYEHPKDLKLSDGRLHVGY

Parental  VSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQ
          VSSDFGNHPTSHLMQSIPGMHNPDKF.VFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQ
Retrocopy VSSDFGNHPTSHLMQSIPGMHNPDKFKVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQ

Parental  DGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMP
          DGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPA..AEQYSEKLAYMP
Retrocopy DGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAKFAEQYSEKLAYMP

Parental  HTFFIGDHANMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNT
          HTFFIGDHA.MFPHLKKKAVIDFKSNGHIYDNRIVLNGIDL.AFLDSLPDVKIVKMKCPDGGD.ADSSNT
Retrocopy HTFFIGDHASMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLQAFLDSLPDVKIVKMKCPDGGDDADSSNT

Parental  ALNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPED
          ALNMPVIPMNTIAEAVIEMINRG.IQITINGFS.SNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPED
Retrocopy ALNMPVIPMNTIAEAVIEMINRGHIQITINGFSVSNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPED

Parental  AIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEE
          AIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSP.APKEE
Retrocopy AIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPMAPKEE

Parental  HVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKSRQEYEDIA
          HVRRGQLAD.CLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKSRQEYEDIA
Retrocopy HVRRGQLADICLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKSRQEYEDIA

Parental  VKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTVELERLYLQMWEHYAAGNKPDHMIKPVEVTESA
          VKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTVELERLYLQ.WEHYAAGNKPDHMIKPVEVTESA
Retrocopy VKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTVELERLYLQLWEHYAAGNKPDHMIKPVEVTESA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1006 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000007524	1 retrocopy	retro_ogar_1006 ,