RetrogeneDB ID: | retro_ocun_757 | ||
Retrocopy location | Organism: | Rabbit (Oryctolagus cuniculus) | |
| Coordinates: | 14:73569047..73569459(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSOCUG00000016924 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ocun_757
GGGGCTGCATGTGCCAGAGACTTGAGCTTGTTTCAGTTGCCTTTAAAGGCAGAAAGCTCATGGTGAAAATTGTTATTTCC
AGTATGGGGGCTCAGGACTAGCAGAATGGATGCTGATTGAGCTTCAGGGAAATATCAAGGCTCATTACATCACCAAATTA
GTTGAAAACCTCCTGGGATACCTACATTGCTTTACTGAGAGAATCCCATTGTGATCGTGGGGCATCATATTCTGTTTGGG
AAAATCATCCACTGGAGAAACATTTTGCAGTCCTTGTCAAACACACTCCAGGGGAGCAAGACTGTGATGAGCTTGGTGGT
AAGATTGGTACCCAGTACCTGGTGTAGCATTCATCAAAAACACAATCATTTTCAAAACCTGCATTAAACCCATTATCACC
AGTGCCACTAGA
ORF - retro_ocun_757 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 67.36 % |
| Parental protein coverage: | 75.82 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 5 |
Retrocopy - Parental Gene Alignment:
| Parental | GAARAGAWSLFQL-LFKDGKLMVQIVISSAGA-GGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEG |
| GAA.A...SLFQL..FK..KLMV.IVISS.GA..GLAEW.L.ELQG.I.A.Y.T.L..NLLG.LH..TE. | |
| Retrocopy | GAACARDLSLFQL<AFKGRKLMVKIVISSMGA<SGLAEWMLIELQGNIKAHYITKLVENLLGYLHCFTER |
| Parental | I-PVLIVGHHILYGKIIH-LEKPFAVLVKHTPGE-DCDELGSETGTRYLV-TALIKNKILFKTRPKPIIT |
| I.P..IVGHHIL.GKIIH.LEK.FAVLVKHTPGE.DCDELG...GT.YLV..A.IKN.I.FKT..KPIIT | |
| Retrocopy | I<PIVIVGHHILFGKIIH<LEKHFAVLVKHTPGEQDCDELGGKIGTQYLV<VAFIKNTIIFKTCIKPIIT |
| Parental | NVPK |
| .... | |
| Retrocopy | SATR |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 23 .34 RPM |
| SRP017611_kidney | 0 .00 RPM | 38 .41 RPM |
| SRP017611_liver | 0 .00 RPM | 13 .41 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_757 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_757 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_757 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Oryctolagus cuniculus | ENSOCUG00000016924 | 1 retrocopy |
retro_ocun_757 ,
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