RetrogeneDB ID: | retro_obar_6 | ||
Retrocopy location | Organism: | Oryza barthii | |
| Coordinates: | 7:23903885..23905649(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | OBART07G27290 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | OBART03G13620 | ||
| Aliases: | None | ||
| Description: | None |
| Percent Identity: | 82.62 % |
| Parental protein coverage: | 95.54 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
| Parental | GCPMTSARPAPVSAGEASLGRHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRLVGCCNELNAGYA |
| G.P...A...P.S.G.A.LG.HLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLR.VGCCNELNAGYA | |
| Retrocopy | GSPKEAAVVVP-SSGDATLGGHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRVVGCCNELNAGYA |
| Parental | ADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIAGGPNSNDYGTNRILHHTIGLPDFSQELR |
| ADGYARARGVGACAVTFTVGGLSVLNAI.GAYSENLP.ICI.GGPNSNDYGTNRILHHTIGLPDFSQELR | |
| Retrocopy | ADGYARARGVGACAVTFTVGGLSVLNAIGGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR |
| Parental | CFQTVTCHQAVVTNLEDAHEQIDTAIATALRESKPVYLSISCNLPGLPHPTFSRDPVPFFLAPRLSNKMG |
| CFQ..TC.QAVV.NL.DAH.QID.AI.TA.RESKPVY.S.SCNLP..PHPTFSRDPVP.FL.PRLSN... | |
| Retrocopy | CFQPLTCYQAVVNNLDDAHDQIDRAISTAIRESKPVYISVSCNLPAVPHPTFSRDPVPYFLSPRLSNQAS |
| Parental | LEAAVEATVEFLNKAVKPVLVGGPKLRVAKAGKAFVDLVDASGYAYAVMPSAKGLVPETHPHFIGTYWGA |
| L.AA..AT..FL.KAVKPVLV.GPKLRVAK.G.AFVDL.DASGYA.A.MPSAKGLVPET.P.FIGTYWGA | |
| Retrocopy | LHAALDATLAFLDKAVKPVLVAGPKLRVAKSGGAFVDLADASGYAVAAMPSAKGLVPETLPRFIGTYWGA |
| Parental | VSTAFCAEIVESADAYLFAGPIFNDYSSVGYSFLLKKDKAIIVQPERVIVGNGPAFGCVMMKEFLSELAK |
| VSTAFCAEIVESADAYLFAGPIFNDYSSVGYS.LLKK.KA..VQP.RV..GNGPAFGCVMM..FLSELAK | |
| Retrocopy | VSTAFCAEIVESADAYLFAGPIFNDYSSVGYSCLLKKEKAVVVQPDRVTIGNGPAFGCVMMRDFLSELAK |
| Parental | RVNKNTTAYENYKRIFVPEGQPLESEPNEPLRVNVLFKHVQKMLNSD--SAVIAETGDSWFNCQKLKLPE |
| RV.KNTTA..NYKRIFVPEGQ..E.E..E.LRVNVLFKH.Q.M.......AV.AETGDSWFNCQKL.LPE | |
| Retrocopy | RVRKNTTAFDNYKRIFVPEGQLPECEAGEALRVNVLFKHIQRMIGGAEIGAVMAETGDSWFNCQKLRLPE |
| Parental | GCGYEFQMQYGSIGWSVGALLGYAQGAKDKRVIACIGDGSFQVTAQDVSTMIRCAQNSIIFLINNGGYTI |
| GCGYEFQMQYGSIGWSVGALLGYAQ.A..KRV.ACIGDGSFQVTAQDVSTM.RC.Q.SIIFLINNGGYTI | |
| Retrocopy | GCGYEFQMQYGSIGWSVGALLGYAQ-AVQKRVVACIGDGSFQVTAQDVSTMLRCGQRSIIFLINNGGYTI |
| Parental | EVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTSKVKCEEELTEAIGMALGEKKDCLCFIEVIAHKDDTS |
| EVEIHDGPYNVIKNW.Y.GLV.AIHNGEG.CW...V.CEEEL..AI..A.G.K.D.LCFIEV.AHKDDTS | |
| Retrocopy | EVEIHDGPYNVIKNWDYVGLVNAIHNGEGRCWATRVRCEEELEAAIATATGDKADSLCFIEVVAHKDDTS |
| Parental | KELLEWGSRVSAANSRPPNPQ |
| KELLEWGSRVSAANSRPPNPQ | |
| Retrocopy | KELLEWGSRVSAANSRPPNPQ |
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Zea mays | GRMZM2G087186 | 1 retrocopy | |
| Oryza barthii | OBART03G13620 | 1 retrocopy |
retro_obar_6 ,
|
| Oryza glumaepatula | OGLUM03G13720 | 1 retrocopy | |
| Oryza meridionalis | OMERI02G33690 | 1 retrocopy | |
| Oryza punctata | OPUNC03G13130 | 1 retrocopy | |
| Oryza rufipogon | ORUFI03G14280 | 1 retrocopy |