RetrogeneDB ID: retro_oana_74

Retrocopy location

• Organism: Platypus (Ornithorhynchus anatinus)
• Coordinates: Contig39833:735..1065(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOANG00000028570
• Aliases: None
• Description: None

Sequence

>retro_oana_74
ATGGCCCATAGTATTGGTGTCTTTCGTCATCAAAATGATATTTACTGTAACCCTTTTGTCTTGAATATGGACTGTTATAA
ATGGGTGGAGAGAGATTCGTATTTACCAAATGGCTCGAGGACATTAAAGCAGGTGTGCAAAATCAAACTAAAGTATAACC
CGGTTGAAATTGATCCCGAAGACATGGTTCCATTGGCTAGGTGCGACCCCCAAAAACTTGCAGTGTACAGTGTATCAGAT
GCCGTGGCTACATATTATCTTTATGTTAAGTTCATACACAGTTTTGTATTCGCGCTGAGCTCCATAATTCCACTCCCTCC
CAACGATATA

Alignment

ORF - retro_oana_74 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.91 %
• Parental protein coverage: 80.29 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MYQEIGFQKDNQGEYKASQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMCRMATEQP
          M...IG........Y.......MDC..WV.RDSYLP.GS..LK...K.KL.Y.PVE.DPE.M...A...P
Retrocopy MAHSIGVFRHQNDIYCNPFVLNMDCYKWVERDSYLPNGSRTLKQVCKIKLKYNPVEIDPEDMVPLARCDP

Parental  QTLATYFVSDAVATYYMYMKYVHPFIFALCTIIPMEPDEV
          Q.LA.Y.VSDAVATYY.Y.K..H.F.FAL..IIP..P...
Retrocopy QKLAVYSVSDAVATYYLYVKFIHSFVFALSSIIPLPPNDI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.09 RPM
SRP007412_kidney	0.00 RPM	0.89 RPM
SRP007412_liver	0.00 RPM	0.09 RPM
SRP007412_testis	0.00 RPM	1.07 RPM

ChIP-Seq

Ornithorhynchus anatinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_oana_74 retrocopy.

TSS

Ornithorhynchus anatinus was not studied using FANTOM5 data.

Lab

retro_oana_74 was not experimentally validated.

Homology

Retrocopy orthology:

Ornithorhynchus anatinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Ornithorhynchus anatinus	ENSOANG00000028570	1 retrocopy	retro_oana_74 ,