RetrogeneDB ID: retro_oana_70

Retrocopy location

• Organism: Platypus (Ornithorhynchus anatinus)
• Coordinates: Contig33451:113..1353(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOANG00000021754
• Aliases: None
• Description: None

Sequence

>retro_oana_70
TCCAGATGAAATAGGTCAGGTCTGGGGCACAGGTAAGGCCTCGGCCAGAGGTTTAGCTGGAAGAAAAGATCAGGCCGGGA
GCAAAGGGCGGGCCGGGAGCAGAGGTTTAACCGGGAGCAGAGGTTTAGCCGGGAGAAAAGATCAGGCCGGGAGCAAAGGG
CGGGACGGGGGCAGAGGGTTAACCGGGAGCAGAGGTTTAGCCGGCAGAAAAGATCAGGCCGGGAGCAAAGGGCGGGCCGG
GGGCAGAGATTTAACCGGGAGCAGAGGTTTAGCCGGGAGAAAAGATGGGGCCGGGAGCAAAGATGGCGCCGGGAGCAGAG
CCCAGACCCGCTGAAAAGTTCAGGCCAGAAGAAAAAAAATGTTAGGACGGAGGAAAAGGTTTGGCCGGGAGAAAAGATCA
GGCCGGAAAAAAACATCAGGCCGGGAGCAAAGGGCGGGGCGGGGGCACAGGTTTGGCGGGGAGAAAACATCAGGCCGGGA
GCAAAGGGCGGGCCGGGGGCAGAGGTTTAGCGGGGAGAAAAGATCCGGTCGGAAGCAAAGGGCGGAGCGGGGGCAGAGAT
TTAACCGGGAGCAGAGGTTTAGCCGGAAGAAAAGATGGGGCTGGGAGCAAAGGGCGGGACGGGAGCAGAGGTTTGGCCGT
GAGAAAAGATCAGGCCTGGAGCAAAGGGCGGGTCCGGGGGCAGAGGTCAGGCCGGGAGAAAACATCAGGCCGGGAGCAAA
CGGCGGGCCGGGGGCAGAGGTTTGGCCGGAAGAAAACATCAGGCCGCGAGCAAAGGGCGGGCCACGAGCAGAGGTTTGGC
CGGGAGAAAAAATCAGGACGGAAGAAAAGATCAGGCCGGGAGCAAAGGACGGGCCGGGGTCAGAGATTTAGCCTGGAGAA
GACATCAGGCCGGAAGAAAGGATCAGGCCGGGAGCAAAGGGCGGGCCGGGGGCAGAGGTTTCACCGCGAGGAGAGGTTTA
GCCGGGAGAAAAGATCAGGCCGGGAGCAAAGGGCGGGCCGGGGGCACAGGTTTAACCGGGGGCACAGGTTTGGCCGGGAG
AAAAGATCATGCCGGGAGCAAAGGGCAGGCCCGCAGAAAAGGTGGGGCCGGGAGCAAAGATCAGGCCGACGGAAAAAATT
GTTTCGGAAGGAAGAGATCAGGCGTTTGTTAGATCGGGCCAGGAACATAAGTTTAGTGGGGAGAAAAGATCGGGCCGGAG
CACCAGCTTGGTCCGGGTGCAGAGGTTTAATCGGAGAAAA

Alignment

ORF - retro_oana_70 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.31 %
• Parental protein coverage: 60.32 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  AREQRAGRGQRFNREQKFSREKRSGREQRAGRGQRFKREQRFSREKRSGREQRAGRGQRFNRELRFSREK
          .R..R.G.G.R....Q.FS..KRSGREQRAGR.QRF.REQRFSREKRSGREQRAGRGQR.NRE.RFSR.K
Retrocopy SR*NRSGLGHR*GLGQRFSWKKRSGREQRAGREQRFNREQRFSREKRSGREQRAGRGQRVNREQRFSRQK

Parental  RSGPEQRAGRGQRFNREQRFSREKRSGREQSRKHRSGQEQSFSREKRSGREQRETR-RKGGAGSKDREQR
          RSG.EQRAGRGQRFNREQRFSREKR.GREQ....R...EQS....K.SG......R.R....G...R..R
Retrocopy RSGREQRAGRGQRFNREQRFSREKRWGREQ----RWRREQSPDPLKSSGQKXXXVR>RRKRFGREKRSGR

Parental  ---AGREQRANREQRFSREKRSGREQRLGRGQRFSQEKRSGWEQRAGQRQRFNREQRFSREKRSGREQRA
          ....GREQRA.R..RF..EK.SGREQR.GRGQRFS.EKRSG..QRA...QRFNREQRFSR.KR.G.EQRA
Retrocopy KKTSGREQRAGRGHRFGGEKTSGREQRAGRGQRFSGEKRSGRKQRAERGQRFNREQRFSRKKRWGWEQRA

Parental  GRGQRFNREQWFSREKRSG-RQQRVGRGQRFSQEKRSGREQRAGRGQRFNREQRFSREKRSGREQRAGRR
          GR.QRF.RE.....E.R.G.R.QR.GR......E...GR.QR.GR.....REQR...E.R.GRE...GR.
Retrocopy GREQRFGREKRSGLEQRAG>RGQRSGREKTSGREQTAGRGQRFGRKKTSGREQRAGHEQRFGREKKSGRK

Parental  QRFNREQRLGREQRFSWEKRSGREQSECRGQRFNREQRFSREERSGREQRAGRGQRFNREHWFSREKRSG
          .R..REQR.GR.QRFS.EK.SGR.....R.QR..R.QRF.REER..RE.R.GR.QR..R.H.F.R..R.G
Retrocopy KRSGREQRTGRGQRFSLEKTSGRKKGSGREQRAGRGQRFHREERFSREKRSGREQRAGRGHRFNRGHRFG

Parental  REQRETRRKGCGQRFSQEKRPGREQRAGREQRFNREKRLGR-EQRAGLGQRFNREQWFSREKRSGREQRE
          RE.R..R.....QR....KR.GREQR.GR.....R.....R...R.G....F..E....R.....R.QR.
Retrocopy REKRSCRE----QRAGPQKRWGREQRSGRRKKLFRKEEIRR<FVRSGQEHKFSGEKRSGRSTSLVRVQRF

Parental  IRRK
          .RRK
Retrocopy NRRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.05 RPM	0.14 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.09 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Ornithorhynchus anatinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_oana_70 retrocopy.

TSS

Ornithorhynchus anatinus was not studied using FANTOM5 data.

Lab

retro_oana_70 was not experimentally validated.

Homology

Retrocopy orthology:

Ornithorhynchus anatinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ornithorhynchus anatinus	ENSOANG00000021754	2 retrocopies	retro_oana_70 , retro_oana_95,