RetrogeneDB ID: retro_oana_6

Retrocopy location

• Organism: Platypus (Ornithorhynchus anatinus)
• Coordinates: Ultra32:1135689..1136391(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOANG00000006706
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOANG00000006132
• Aliases: None
• Description: None

Sequence

>retro_oana_6
ATGGCAAGCTACTATGAGGTTCTCGGAGTGCATTCGAGTGCTTCCCAAGAAGAGATAAAGAAGGCCTACCGCAAGCAGGC
CTTGAAGTGGCACCCAGATAAGAACCCTAACAACAAAGAAGAGGCAGAGAAAAAATTCAAACAAATATCTGAAGCGTACG
AGGTACTTTCTGACGTTAAGAAGAGATCCGTGTACGATGGGGACTGCAATGACGACTGGCGTGCTGGAGGAGGGGCCGGA
GGAAATTACAACAACTCTTTTGGATCCGGATATACTTTTCGGAATCCACAGGATATTTTTCAGGAGTTTTTTAATGGAAT
CGATCCATTTTCCTTCGATTTCTGGGACAACCCCTTCAGTGCTGATAGAGATCGTGATGGAAATCGAGGCAGAACCATGA
GGGGACCTTTCTCAGCTGGTTTCGGAGAGTTTCCCACTTTCATGGAAGCCTTTTCTACTTTGGACTCTCTGGGCCACGGC
GGACGCACTACCTTCTCTTCCACGTCATTTGGAGGTTCTGCTTCTGATGAGTCTGTGTTCAAATCAGTAATGACATCGAC
TGAAATGATTAATGGCCGGAAGATCACAACCAAGAGAACTGTTGAGAATGGGGAGGACAGGATCGAAGTGGATGAGGATG
GCCAGTTGAAATCGGTCATCGTGAATGGCAAGGAACAACTAAGGCCCATGGAAAAGAAGTAA

Alignment

ORF - retro_oana_6 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.8 %
• Parental protein coverage: 54.29 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPDNKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGK
          M..YYEVLGV...AS.E.IKKAYRK.ALKWHPDKNP.NKEEAE..FKQ..EAYEVLSD.KKR..YD....
Retrocopy MASYYEVLGVHSSASQEEIKKAYRKQALKWHPDKNPNNKEEAEKKFKQISEAYEVLSDVKKRSVYDGDCN

Parental  EGLNGGGGGGNLFNNQFECGFTFRNPNDVFREFFGGRDPFSFDFFEDPFESFFGSARGPRGSRSRGAGPF
          .....GGG.G...NN.F..G.TFRNP.D.F.EFF.G.DPFSFDF...PF.S......G.RG...R..GPF
Retrocopy DDWRAGGGAGGNYNNSFGSGYTFRNPQDIFQEFFNGIDPFSFDFWDNPF-SADRDRDGNRGRTMR--GPF

Parental  FSAFSGFPAFGSGFSSFDT----GFTSFGSLGHGGLSSFSS
          ...F..FP.F...FS..D.....G.T.F.S...GG..S..S
Retrocopy SAGFGEFPTFMEAFSTLDSLGHGGRTTFSSTSFGGSASDES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.00 RPM	131.67 RPM
SRP007412_cerebellum	0.37 RPM	72.56 RPM
SRP007412_heart	0.00 RPM	55.08 RPM
SRP007412_kidney	0.00 RPM	36.42 RPM
SRP007412_liver	0.00 RPM	14.83 RPM
SRP007412_testis	678.64 RPM	162.60 RPM

ChIP-Seq

Ornithorhynchus anatinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_oana_6 retrocopy.

TSS

Ornithorhynchus anatinus was not studied using FANTOM5 data.

Lab

retro_oana_6 was not experimentally validated.

Homology

Retrocopy orthology:

Ornithorhynchus anatinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000005254	1 retrocopy	retro_mdom_73,
Ornithorhynchus anatinus	ENSOANG00000006132	1 retrocopy	retro_oana_6 ,