RetrogeneDB ID: | retro_oana_2 | ||
Retrocopy location | Organism: | Platypus (Ornithorhynchus anatinus) | |
| Coordinates: | Contig13244:5201..5936(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSOANG00000005379 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GNAT3 | ||
| Ensembl ID: | ENSOANG00000003488 | ||
| Aliases: | None | ||
| Description: | guanine nucleotide binding protein, alpha transducing 3 [Source:HGNC Symbol;Acc:22800] |
Retrocopy-Parental alignment summary:
>retro_oana_2
TCCTGCTATACCATGGGATGTAGGCAAAGCTCTGAGGAGAAAGAGGCGGCTCGGCGGTCCCGGAGAATCGACCGCCACCT
GCGCTCGGAGAGCCAACGGCAACGTCGGGAGATCAAGCTTCTTCTCTTGGGTACCAGCAACTCGGGCAAGAGCACCATCG
TCAAGCAGATGAAGATCATCCACAGCGGGGGGTTTAACCTAGAGGCGTGCAAGGAGTACAAGCCACTGATCATCTACAAC
GCCATCGACTCCCTCACCCGCATCATCCGGGCCCTGGCCACCCTCAAGATCGAGTTCCACAATCCAGACAGGGCCTACGA
CGCCGTCCAGCTGTTCGCCTTGACCGGCCCCGCGGAAAGCAAAGGAGAAATCACCCCCGAGCTCCTCGGGGTCATGAAAC
GACTCTGGGCCGACCCAGGGGTGCAGGAATGTTTCTGTCGCTCCAACGAGTACCACCTCGAGGACAATGCGGCGTACTAC
CTGAATGACCTAGAAAGGATTGCCGCACTGGATTACATCCCCACGGTAGAAGACATTCTCCGATCTCGGGACATGACCAC
TGGCATCGTGGAAAATAAATTTACCTTCAAGGAACTGACTTTCAAAATGGTGGACGTGGGGGGTCAGCGGTCAGAACGCA
AAAAATGGATCCATTGTTTCGAGGGAGTTACAGCAATAATTTTCTGCGTGGAGCTGAGTGGATATGATTTGAAGCTGTAC
GAAGATAACCAAACG
ORF - retro_oana_2 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 53.69 % |
| Parental protein coverage: | 70.43 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MGSKVSVESKESAKRSRELEKKLQEDAARDARTVKLLLLGAGESGKSTIVKQMKIIHKNGYTEQECMEYK |
| MG...S.E.KE.A.RSR.....L.....R..R..KLLLLG...SGKSTIVKQMKIIH..G.....C.EYK | |
| Retrocopy | MGCRQSSEEKEAARRSRRIDRHLRSESQRQRREIKLLLLGTSNSGKSTIVKQMKIIHSGGFNLEACKEYK |
| Parental | AVVYSNILQSILAIMKAMTTLGIEYGNPQSAEDEKQLGMMANTLED-GTMTSELAERMKRLWRDSGIQAC |
| .....N...S...I..A..TL.IE..NP..A.D..QL.......E..G..T.EL...MKRLW.D.G.Q.C | |
| Retrocopy | PLIIYNAIDSLTRIIRALATLKIEFHNPDRAYDAVQLFALTGPAESKGEITPELLGVMKRLWADPGVQEC |
| Parental | FKRASEYQLSDSAAYYLNDLDRLTAPGYLPNEQDVLRSRVKTTGIIETQFSFKDLHFRGKKRMFDVGGQR |
| F.R..EY.L.D.AAYYLNDL.R..A..Y.P...D.LRSR..TTGI.E..F.FK.L.F.....M.DVGGQR | |
| Retrocopy | FCRSNEYHLEDNAAYYLNDLERIAALDYIPTVEDILRSRDMTTGIVENKFTFKELTFK----MVDVGGQR |
| Parental | SERKKWIHCFEGVTCIIFCAALSAYDMVLVEDEE |
| SERKKWIHCFEGVT.IIFC..LS.YD..L.ED.. | |
| Retrocopy | SERKKWIHCFEGVTAIIFCVELSGYDLKLYEDNQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 22 .08 RPM | 0 .00 RPM |
| SRP007412_cerebellum | 6 .69 RPM | 0 .09 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .44 RPM |
| SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .18 RPM |
| SRP007412_testis | 0 .83 RPM | 0 .00 RPM |
Ornithorhynchus anatinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_oana_2 retrocopy.
Ornithorhynchus anatinus was not studied using FANTOM5 data.
retro_oana_2 was not experimentally validated.
Retrocopy orthology:
Ornithorhynchus anatinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ornithorhynchus anatinus | ENSOANG00000003488 | 1 retrocopy |
retro_oana_2 ,
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