RetrogeneDB ID: retro_nleu_663

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397269.1:11608092..11608419(-)
• Located in intron of: ENSNLEG00000003554

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C11ORF48
• Ensembl ID: ENSNLEG00000004026
• Aliases: None
• Description: None

Sequence

>retro_nleu_663
GAATAGAAGAAGCAGCTGTTCAGGCACCTGCAGGTGTTGAACTGGGAGCTGCAACTGAGGCACTCGGTGGTTGGGACTGT
GACAGACCAAGGGTTGATTTCACCACATCACCTCAAGAAGAGGGCATCCAGTGCATCTACCATTACTCTGTCGGGGAAGA
AGCACAGGAAACCCCTCTAGTGGATCTGACTTGCCCAGAAAGAGAAGGCAGCTATGGAAGTCAAATCCCCCTCAAAGCCA
GCCATGATTAGTGAACCACAGCTCAAAGGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAGATGAAGGAACTTGAAGA
TGAGAGC

Alignment

ORF - retro_nleu_663 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.55 %
• Parental protein coverage: 89.43 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ELKKKLFKRRRVLNRERRLRHRVVGAVIDQGLITRHHLKKRASSARANITLSGKKRRKLLQQIRLAQKEK
          E.KK.LF....VLN.E..LRH.VVG.V.DQGLI..HHLKKRASSA...ITLSGKK.RK.L..I.LAQKEK
Retrocopy E*KKQLFRHLQVLNWELQLRHSVVGTVTDQGLISPHHLKKRASSA-STITLSGKKHRKPL*WI*LAQKEK

Parental  AAMEVEAPSKPARTSEPQLKRQKKTKAPQDVEMKDLEDES
          AAMEV..PSKPA..SEPQLK.QKKTKAPQDVEMK.LEDES
Retrocopy AAMEVKSPSKPAMISEPQLKGQKKTKAPQDVEMKELEDES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_663 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000162194	3 retrocopies	retro_hsap_2760, retro_hsap_3681, retro_hsap_4139,
Nomascus leucogenys	ENSNLEG00000004026	3 retrocopies	retro_nleu_1055, retro_nleu_529, retro_nleu_663 ,