RetrogeneDB ID: | retro_nleu_1687 | ||
Retrocopy location | Organism: | Gibbon (Nomascus leucogenys) | |
| Coordinates: | GL397304.1:2395097..2395430(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSNLEG00000000733 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CDK7 | ||
| Ensembl ID: | ENSNLEG00000026959 | ||
| Aliases: | None | ||
| Description: | cyclin-dependent kinase 7 [Source:HGNC Symbol;Acc:1778] |
Retrocopy-Parental alignment summary:
>retro_nleu_1687
GTTATAATAAAGGATAATAGTCTTGTGCTGACACCATCACACATCAAAGCCTGCATGTTGATGACTCTTCAAGGATTAGA
ATATTTACATCAACATTGGATCCTACATAGGGATCTGAAGCCAAGCAACTTGTTGCTAGATGAAAATGGAGTTCTAAAAC
TGGCAGATTTTGGCCTGGCCAAATCATTTGGGAGCCCCAATAGAGCTTATACACATGAGGTTGCAACCAGGTGGTATCAG
GCCCCTGAGTTACTATTTGGAGCTAGGAAGTATGGTGTAGGTGTGGACATGTGGGCTGTTGGCTGTATATTGGCAGAGTT
ACTTCTAAGAGTT
ORF - retro_nleu_1687 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 94.59 % |
| Parental protein coverage: | 71.15 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAY |
| VIIKDNSLVLTPSHIKA.MLMTLQGLEYLHQHWILHRDLKP.NLLLDENGVLKLADFGLAKSFGSPNRAY | |
| Retrocopy | VIIKDNSLVLTPSHIKACMLMTLQGLEYLHQHWILHRDLKPSNLLLDENGVLKLADFGLAKSFGSPNRAY |
| Parental | THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRV |
| TH.V.TRWY.APELLFGAR.YGVGVDMWAVGCILAELLLRV | |
| Retrocopy | THEVATRWYQAPELLFGARKYGVGVDMWAVGCILAELLLRV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1687 was not experimentally validated.
Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Nomascus leucogenys | ENSNLEG00000026959 | 1 retrocopy |
retro_nleu_1687 ,
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