RetrogeneDB ID: | retro_mtru_8 | ||
Retrocopy location | Organism: | Barrel medic (Medicago truncatula) | |
| Coordinates: | 4:1141690..1142077(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | MTR_4g007580 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | MTR_4g007570 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mtru_8
ATGAAGCTTATGCTTCTTTCAACTTTCCTTCTCATCATTTCAACAGCTCTAGCCAACATATCAAATGAACAAGATTTCAA
TACCAAACAAGCACATGAACTTAATGGAAATGGAAACATACAAGTCTCTACTAGGTTGAACCGCGGAGTTGTGATGATGG
AAAGTAATGAACACAAACATGAACTATCTGTTACCATAAGAAAAGGAGGAGGAATAGGCAGAGGAATAGGCAGAGGAGTG
GGTGGTGGAGTTATCGGTGCTGGAGTTATCGGCGGGTCAACCACCTATGACAGGAGTCATCACTCCAATAGTTCTGCATC
ATCATTATCTGCAGGGCCTTATGTTTGTGTCTCAACATTTATTTTATGTTTGAGCTTTTGGTTATAA
ORF - retro_mtru_8 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 81.82 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MKLMLLATFLLIISRALA-ISNEQDFNSKQPHELNGSLDGNGNIEVSTRLNHRVAMMESNEHKHELSVTI |
| MKLMLL.TFLLIIS.ALA.ISNEQDFN.KQ.HELN....GNGNI.VSTRLN..V.MMESNEHKHELSVTI | |
| Retrocopy | MKLMLLSTFLLIISTALANISNEQDFNTKQAHELN----GNGNIQVSTRLNRGVVMMESNEHKHELSVTI |
| Parental | RKGGGIGRGVGAGAGAGIIGAGVIGGSTAYHGSHRSNSSAPSLSAGPYVCVSTFLLCLSFWL |
| RKGGGIGRG.G.G.G.G.IGAGVIGGST.Y..SH.SNSSA.SLSAGPYVCVSTF.LCLSFWL | |
| Retrocopy | RKGGGIGRGIGRGVGGGVIGAGVIGGSTTYDRSHHSNSSASSLSAGPYVCVSTFILCLSFWL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Medicago truncatula was not studied using RNA-Seq expression data.
Medicago truncatula was not studied using ChIP-Seq data.
Medicago truncatula was not studied using EST data.
Medicago truncatula was not studied using FANTOM5 data.
retro_mtru_8 was not experimentally validated.
Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Medicago truncatula | MTR_4g007570 | 1 retrocopy |
retro_mtru_8 ,
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