RetrogeneDB ID: retro_mtru_75

Retrocopy location

• Organism: Barrel medic (Medicago truncatula)
• Coordinates: 6:27301960..27302153(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: MTR_8g468080
• Aliases: None
• Description: None

Sequence

>retro_mtru_75
GGAGGTTCCCTTAGGAAACTAAAGGATACTATTTCTACATCTTCTTCCTGGACAAAAGTTGTTTGTCGCTAGTACTGGAG
TATTCCTTTTCAAGGAGTATAACTTTGCAAGAGCTAGTGGGAGTGATGTAGAACTTGAATTAAGTCAAGTACCACAAAAT
ACATGTTTCTCAATGGAACATGAACTGATTCAA

Alignment

ORF - retro_mtru_75 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.0 %
• Parental protein coverage: 52.89 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GCSLRKLKDTISTSSSLTK-LFVARTEVFLFKEYGSARASGSDGFVNLKDTRKEISGSIDISLVE
          G.SLRKLKDTISTSSS.TK.LFVA.T.VFLFKEY..ARASGSD....L.........S....L..
Retrocopy GGSLRKLKDTISTSSSWTK>LFVASTGVFLFKEYNFARASGSDVELELSQVPQNTCFSMEHELIQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Medicago truncatula was not studied using RNA-Seq expression data.

ChIP-Seq

Medicago truncatula was not studied using ChIP-Seq data.

EST

Medicago truncatula was not studied using EST data.

TSS

Medicago truncatula was not studied using FANTOM5 data.

Lab

retro_mtru_75 was not experimentally validated.

Homology

Retrocopy orthology:

Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Medicago truncatula	MTR_8g468080	6 retrocopies	retro_mtru_63, retro_mtru_73, retro_mtru_74, retro_mtru_75 , retro_mtru_84, retro_mtru_85,