RetrogeneDB ID: | retro_mtru_69 | ||
Retrocopy location | Organism: | Barrel medic (Medicago truncatula) | |
| Coordinates: | 5:35049351..35049720(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | MTR_5g089130 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mtru_69
TTGTTCTCATACTTTCATTATATTTTTGTGAAGTGAAACATGTCTGAAGATGCACAAGATCCGGTTAAACTTCATGTCCG
TTATGTAGATGTGAAAAAGAGGGCTTGGTTCACTATAAACCCCACCGACAAGTTGGACGAGTTGAAGACAAAACTTGACG
ACTTCTTTATCCATATTGGTTCAAATCACAGAACATATTATGTAGTAGTACAAGTTCCAGGCGTGGACTTGTGGGAGGAT
AAGGAAGAGGACCGTTGGAAGACCGCGTATTTTCCACAACTAGTCAAAGATGATAGTGACGTTGATTACATGTTTCGCGT
GATGGTTGAAAATAATCTTTTACATCTTTATGTCCGATCCGTTGAAGTG
ORF - retro_mtru_69 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.67 % |
| Parental protein coverage: | 92.42 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LFTQIVSLIVKVNVTNETSSTLIKHQR-TDVKKRAWFTINPTDKLDELKAKLDDFFIHIGSNHRTYYVVV |
| LF.......VK.N...........H.R..DVKKRAWFTINPTDKLDELK.KLDDFFIHIGSNHRTYYVVV | |
| Retrocopy | LFSYFHYIFVK*NMSEDAQDPVKLHVRYVDVKKRAWFTINPTDKLDELKTKLDDFFIHIGSNHRTYYVVV |
| Parental | QVPGVDLGEDKEEDRWKTVYFPQLVKDDSDVDYMFRVMVENNLLHLYVRSVEV |
| QVPGVDL.EDKEEDRWKT.YFPQLVKDDSDVDYMFRVMVENNLLHLYVRSVEV | |
| Retrocopy | QVPGVDLWEDKEEDRWKTAYFPQLVKDDSDVDYMFRVMVENNLLHLYVRSVEV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Medicago truncatula was not studied using RNA-Seq expression data.
Medicago truncatula was not studied using ChIP-Seq data.
Medicago truncatula was not studied using EST data.
Medicago truncatula was not studied using FANTOM5 data.
retro_mtru_69 was not experimentally validated.
Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Medicago truncatula | MTR_5g089130 | 2 retrocopies |
retro_mtru_67, retro_mtru_69 ,
|