RetrogeneDB ID: retro_mputfur_38

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897039.1:2766222..2766861(+)
• Located in intron of: ENSMPUG00000002428

Retrocopy information

• Ensembl ID: ENSMPUG00000019110
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000009716
• Aliases: None
• Description: None

Sequence

>retro_mputfur_38
ATGAACGGAGCTCTGGGAAAGATGCTGTGTCTGAAGAACGATATCATTTTTAAGCAAGCCTTTTCTCTCTTAAGGGTCAG
AACTTCAGGAGAAAATCCCATCAGTTCTGCAGGTGGCATTCTGCTGAGTACCAGTCGGCACTACAAGACAAGGCCTATCC
ATGGCATTGGAAGATACAAGCACCTAGTGAAACCAAAGGAGCCCAAGAAGAAGAGGGCAAAAGTGGAAGTGAGACCCATT
AATTTGGGGGCAGATTATGAATATGGGGTTTTAAACATTCACCTGACTGCATACAACATGGCTGTGGTGGAGAGTTATGC
CCAATATGCTCACAACCTCTGTAACCATCTATCCATTAAAGTTGAGAAAAGTTACTCTATGCCCACCAAAACCATGGAGG
TGTTGCGGCTACAGGACCAAGGCAGCAAAATGCTCCCGGACTCAGTTCTCACCACCCATGAGCGAGTGGTTCAGATCAGC
GGTTTGAGTGCTACATTTGCAGAGATTTTCTTGGAAATAATCCAAAGCAATCTTCCCGAAGGAGTGAGATTATCAGTGAA
GGAGCACACTGAAGAAGACTTCAAGGGAAGGTTCAAAACTCAGCCAGAGCTGGAAGAACTATTGGCCAAGTTGAACTAG

Alignment

ORF - retro_mputfur_38 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.6 %
• Parental protein coverage: 73.1 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNGALGKMLCLRNDIIFKQAFSLLRVRTSGENPISSAGGILLSTSRHYKTRPTHGIGRYKHLVKPQEPKK
          MNGALGKMLCL.NDIIFKQAFSLLRVRTSGENPISSAGGILLSTSRHYKTRP.HGIGRYKHLVKP.EPKK
Retrocopy MNGALGKMLCLKNDIIFKQAFSLLRVRTSGENPISSAGGILLSTSRHYKTRPIHGIGRYKHLVKPKEPKK

Parental  KRAKVEVRPINLGTDYEYGVLNIHLTAYDMAVVESYAQYVHNLCNHLSIKVEERY
          KRAKVEVRPINLG.DYEYGVLNIHLTAY.MAVVESYAQY.HNLCNHLSIKVE..Y
Retrocopy KRAKVEVRPINLGADYEYGVLNIHLTAYNMAVVESYAQYAHNLCNHLSIKVEKSY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_38 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_38 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000005585	1 retrocopy	retro_cfam_1437,
Choloepus hoffmanni	ENSCHOG00000003662	1 retrocopy	retro_chof_2664,
Homo sapiens	ENSG00000175581	1 retrocopy	retro_hsap_3557,
Mustela putorius furo	ENSMPUG00000009716	1 retrocopy	retro_mputfur_38 ,
Mus musculus	ENSMUSG00000030706	2 retrocopies	retro_mmus_2478, retro_mmus_563,
Nomascus leucogenys	ENSNLEG00000017097	1 retrocopy	retro_nleu_1376,
Oryctolagus cuniculus	ENSOCUG00000009302	1 retrocopy	retro_ocun_39,
Otolemur garnettii	ENSOGAG00000004771	1 retrocopy	retro_ogar_234,
Pan troglodytes	ENSPTRG00000004049	1 retrocopy	retro_ptro_2417,
Tursiops truncatus	ENSTTRG00000005403	2 retrocopies	retro_ttru_1123, retro_ttru_297,
Vicugna pacos	ENSVPAG00000004657	1 retrocopy	retro_vpac_538,