RetrogeneDB ID: retro_mputfur_25

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896899.1:29957217..29958762(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000020112
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000017316
• Aliases: None
• Description: None

Sequence

>retro_mputfur_25
ATGAAGCAGATCTCATCCTTCATGTCAGAGATCTCAGATGAGTTTAAGGTGGTGGTGGTCCAGGCCATCAGTGCCCTGTG
TCAGAAGTATCCTCGCAAACACGCTGTGCTCATGAACTTCCTGTTCACCATGCTACGGGAAGAGGGTGGCTTTGAGTACA
AGCGGGCCATCGTGGACTGCATCATCAGCATCATTGAGGAGAACACGGAGAGCAAGGAGACCGGGCTGTCACACCTGTGC
GAATTCATTGAGGACTGCGAGTTCACCGTGCTGGCCACCCCCATCCTGCATCTTCTAGGCCAGGAGGGGCCCAAGACCAA
CAACCCCTCCAAGTACATCCGCTTCATTTATAATCGCGTGGTCTTGGAGCATGAGGAGGTCCGGGCAGGTGCTGTGAGTG
CTCTGGCCAAGTTTGGAGCCCAGAATGAAGAGATGTTACCCAGTATCTTGGTGTTGCTGAAGAGGTGTGTGATGGACGAT
GACAATGAAGTAAGGGACCGAGCCACCTTCTATCTCAATGTCCTGGAGCAGAAGCAGAAGGCCCTCAATGCGGGCTATAT
CCTAAATGGTCTGACTGTTTCCATCCCTGGTCTGGAGAGAGCCCTGCAGCAGTACACTCTAGAACCATCAGAAAAACCTT
TTGACCTCAAGTCTGTGCCCCTAGCGACCACACCAATGGCAGAACAGAGAACAGAAAGTACCCCCATCACAGCCACCAAT
CAGCCCGAGAAAGTGGCAGCCACCCGGCAAGAGATCTTCCAGGAGCAGTTGGCAGCAGTGCCAGAGTTCCAAGGGCTGGG
GCCCCTCTTCAAGTCCTCTCCTGAGCCTGTGGCCCTCACTGAATCAGAGACTGAGTATGTCATCCGCTGCACCAAACACA
CCTTCACTGACCACATGGTGTTCCAGTTTGACTGCACAAACACACTCAACGACCAGACTTTGGAGAACGTCACAGTGCAG
ATGGAGCCCACTGAAGCCTATGAGGTGCTCTGTTACGTGCCTGCCCGAAGCCTACCCTACAACCAGCCTGGGACCTGCTA
CACATTGGTCGCACTGCCCAAGGAGGACCCTAGAGCTGTGGCCTGCACATTCAGCTGCATGATGAAGTTCACTGTCAAGG
ACTGTGACCCCACCACTGGGGAGACCGATGATGAAGGCTATGAAGATGAATATGTGCTGGAAGATCTGGAAGTCACTGTC
GCTGATCACATCCAGAAGGTCATGAAGCTGAACTTTGAAGCAGCGTGGGATGAGGTAGGGGATGAGTTCGAGAAGGAGGA
AACATTCACCTTGTCTACCATCAAGACACTTGAAGAGGCTGTGGGCAATATCGTGAAATTTCTGGGAATGCACCCTTGTG
AGAGGTCAGACAAAGTGCCAGATAACAAGAACACCCATACGTTGCTCCTGGCTGGTGTGTTCCGGGGAGGTCATGACATC
TTGGTGCGCTCCCGACTGCTGCTTTTGGACACAGTAACAATGCAGGTGACAGCCAGAAGTTCAGAGGAGCTGCCGGTAGA
CATCCTCTTGGCGTCTGTGGGCTAA

Alignment

ORF - retro_mputfur_25 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.83 %
• Parental protein coverage: 58.72 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MKQISSFMSEISDEFKVVVVQAISALCQKYPRKHAVLMNFLFTMLREEGGFEYKRAIVDCIISIIEENTE
          MKQISSFMSEISDEFKVVVVQAISALCQKYPRKHAVLMNFLFTMLREEGGFEYKRAIVDCIISIIEENTE
Retrocopy MKQISSFMSEISDEFKVVVVQAISALCQKYPRKHAVLMNFLFTMLREEGGFEYKRAIVDCIISIIEENTE

Parental  SKETGLSHLCEFIEDCEFTVLATRILHLLGQEGPKTNNPSKYIRFIYNRVVLEHEEVRAGAVSALAKFGA
          SKETGLSHLCEFIEDCEFTVLAT.ILHLLGQEGPKTNNPSKYIRFIYNRVVLEHEEVRAGAVSALAKFGA
Retrocopy SKETGLSHLCEFIEDCEFTVLATPILHLLGQEGPKTNNPSKYIRFIYNRVVLEHEEVRAGAVSALAKFGA

Parental  QNEEMLPSILVLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLERALQQYTLEPS
          QNEEMLPSILVLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLERALQQYTLEPS
Retrocopy QNEEMLPSILVLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLERALQQYTLEPS

Parental  EKPFDLKSVPLATTPMAEQRTESTPITATKQPEKVAATRQEIFQEQLAAVPEFHGLGPLFKSSPEPVALT
          EKPFDLKSVPLATTPMAEQRTESTPITAT.QPEKVAATRQEIFQEQLAAVPEF.GLGPLFKSSPEPVALT
Retrocopy EKPFDLKSVPLATTPMAEQRTESTPITATNQPEKVAATRQEIFQEQLAAVPEFQGLGPLFKSSPEPVALT

Parental  ESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPARSLPYNQPGTCYTLV
          ESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPARSLPYNQPGTCYTLV
Retrocopy ESETEYVIRCTKHTFTDHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPARSLPYNQPGTCYTLV

Parental  ALPKEDP--VACTFSCMMKFTVKDCDPTTGETDDEGYEDEYVLEDLEVTVADHIQKVMKLNFEAAWDEVG
          ALPKEDP..VACTFSCMMKFTVKDCDPTTGETDDEGYEDEYVLEDLEVTVADHIQKVMKLNFEAAWDEVG
Retrocopy ALPKEDPRAVACTFSCMMKFTVKDCDPTTGETDDEGYEDEYVLEDLEVTVADHIQKVMKLNFEAAWDEVG

Parental  DEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLD
          DEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLD
Retrocopy DEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLLD

Parental  TVTMQVTARSSEELPVDIILASVG
          TVTMQVTARSSEELPVDI.LASVG
Retrocopy TVTMQVTARSSEELPVDILLASVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_25 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_25 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000017316	1 retrocopy	retro_mputfur_25 ,