RetrogeneDB ID: retro_mputfur_225

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896898.1:49831179..49831745(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SAR1A
• Ensembl ID: ENSMPUG00000004338
• Aliases: None
• Description: SAR1 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:10534]

Sequence

>retro_mputfur_225
ATGTATTTCTCCTTTGAGTGGACCAACAGTGTCCTCCAGTTCCTAGGACTCTATAAGAAATACGGAAAACTTGTATTCTT
GGGTTTGGACGATGTAGACAAAACCACTCTTCTACACATGCTCAACAGTGACTGATTGCGCCAATATGTTTCAACATTAG
ATCCAATATCAGACAGGTGACAGTTGCTGGAAAGACTTTTATAACTTTTGATGTTGGCAGTCATGAGCAAGCAAGTCAGG
TTTGGAAAAATTACCTCCCAGCAATCAGTAGGATTGTCTTTCCGGTGGATTGTACAGATCATCCTCACCTCATGGAAACC
ACACTTGAGCTAAATGCTTTAATGACTAATGAAACAATACCAATGTGCCAATCCTTATCTTGGATAACAAAAGCAACAGA
ACAGGTGTAATCAGTGAAGAAAAGCTCCATGAGATATTTAGGCTTTTTGGATAGACCACAGGAAGGGTATTGTGACCTGG
AAGGAGCTGACTCCCTGCCCCATGGAAGTGTTACTTGCAGAGTGCTCAAGAGGCAAGGCTATGGCAAGGGCTTCCACTGG
CTTTCC

Alignment

ORF - retro_mputfur_225 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.18 %
• Parental protein coverage: 97.98 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE-ELTIAGM
          M.F.FEW......SVLQFLGLYKK.GKLVFLGLD...KTTLLHML..D.L.Q.V.TL.P.S....T.AG.
Retrocopy MYFSFEWT----NSVLQFLGLYKKYGKLVFLGLDDVDKTTLLHMLNSD*LRQYVSTLDPISD<QVTVAGK

Parental  TFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETI-SNVPILILGNKIDR
          TF.TFD.G.HEQA..VWKNYLPAI..IVF.VDC.DHP.LME...ELNALMT.ETI..NVPILIL.NK..R
Retrocopy TFITFDVGSHEQASQVWKNYLPAISRIVFPVDCTDHPHLMETTLELNALMTNETI<TNVPILILDNKSNR

Parental  TDAISEEKLREIFGLYGQTTG-KGNVTLKELNARPMEVFM-CSVLKRQGYGEGFRWLS
          T..ISEEKL.EIF.L.G.TTG.KG.VT.KEL...PMEV...C.VLKRQGYG.GF.WLS
Retrocopy TGVISEEKLHEIFRLFG*TTG<KGIVTWKELTPCPMEVLL<CRVLKRQGYGKGFHWLS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_225 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_225 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017868	1 retrocopy	retro_amel_1698,
Gorilla gorilla	ENSGGOG00000024879	3 retrocopies	retro_ggor_144, retro_ggor_2408, retro_ggor_2929,
Mustela putorius furo	ENSMPUG00000004338	1 retrocopy	retro_mputfur_225 ,
Oryctolagus cuniculus	ENSOCUG00000004547	1 retrocopy	retro_ocun_638,