RetrogeneDB ID: retro_mputfur_1460

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897145.1:2174377..2174575(-)
• Located in intron of: ENSMPUG00000000103

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TGIF2-C20orf24
• Ensembl ID: ENSMPUG00000017777
• Aliases: None
• Description: TGIF2-C20orf24 readthrough [Source:HGNC Symbol;Acc:44664]

Sequence

>retro_mputfur_1460
TCTGTCTGGAGCAAGGTGCTGCAGAGCGATGCAGCCTGGGAGGACAAGGACGAATTTTTAGATACAATCCGCTGGTTCCA
ACAGATCATCCCTGTAGTCCTAGGTGTCATTTGGGGAGTGTTAACCATTGTGAGGTTTCCTGGGAATAGCAGGATTCTGC
TGATCAGTGCAGGAGTCCTGGACCTCTAATGCAGCAAC

Alignment

ORF - retro_mputfur_1460 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.35 %
• Parental protein coverage: 51.16 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVL-PLRGFLGIAGFC-LINAGVLYLYFSN
          SVWSKVL.SDAAWEDKDEFLD.I.WF.QII.VVLGVIWGVL.PL.GFLGIAGFC.LI.AGVL.L..SN
Retrocopy SVWSKVLQSDAAWEDKDEFLDTIRWFQQIIPVVLGVIWGVL>PL*GFLGIAGFC<LISAGVLDL*CSN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1460 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1460 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000021805	1 retrocopy	retro_btau_697,
Cavia porcellus	ENSCPOG00000011435	2 retrocopies	retro_cpor_1090, retro_cpor_1382,
Mustela putorius furo	ENSMPUG00000017777	1 retrocopy	retro_mputfur_1460 ,
Otolemur garnettii	ENSOGAG00000000891	1 retrocopy	retro_ogar_1796,
Rattus norvegicus	ENSRNOG00000020317	1 retrocopy	retro_rnor_2185,