RetrogeneDB ID: retro_mputfur_1419

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897124.1:229403..230240(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MAP2K4
• Ensembl ID: ENSMPUG00000003664
• Aliases: None
• Description: mitogen-activated protein kinase kinase 4 [Source:HGNC Symbol;Acc:6844]

Sequence

>retro_mputfur_1419
GTCCACAAACCAAGTGGGCCAATGATGGCAGTTAAAAGAGTTTGGTCAACAGTGGATGAGAAAGAACAAAACCAACTTCT
TATGAATTTGGATGTAGTAATGCAGAGTAGTGATTGCCCGTACATTGTTCAGTTTTATGGTGCACTCTTCAGAGGGGGTG
ACTGTTGGATCTGTATGGAACTCATGTCTACCTCGTTTGATAAGTTTTACAAATATGTATATAGTGTATAAGATGATGTT
ATTCCAGAAGAAATTTTAGGTAAAATCACTTTAGCAACTGTGAAAGCACTAAACCACTTAAAAGAAAACTTGAAAATCAT
TCACAGAGATATAAAACCTTCTAATATTCTTCTGGACAGTGGAAATATTAAGCTCTGTGACTTTGGTATCAGTGGACAGC
TGGTGGACTCCATTGCTAAGACAAGAGATGCAGGGTGTAGGCCTTACATGGCACCTGAAAGAATAGACCCGAGTGCATCA
CGACAAGGATATGACGTCCACTCTGAAGTCTGGAGTTTGGGGATCACATTGTATGAGTTAGCCACAGGTGGGTTTCCTTA
CCCAAAGTGGAACAGTGTGTTCGATCAGCTCATGCAAGTCGTGAAAGGGGACCCTCCGCAGCTGAGCAACTCCGAAGAAT
GCAAGTTCTCCCTGAGCTTCATCAACTTTGTCAACTTGTGCCTTACGAAGGATGAATCCAAAAGGCCAAAGTATAAAGAC
CTTCTGAAACATCCCTTTATTTTGATGTATGAAGAACGTACCGTCGAGGTTGCCTGCTATGTTTGTAAGATCCTGGATCA
GATGCCAGTGACTCCCAGCTCTCCCATGTATGTCGAC

Alignment

ORF - retro_mputfur_1419 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.21 %
• Parental protein coverage: 99.64 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFY
          VHKPSG..MAVKR..STVDEKEQ.QLLM.LDVVM.SSDCPYIVQFYGALFR.GDCWICMELMSTSFDKFY
Retrocopy VHKPSGPMMAVKRVWSTVDEKEQNQLLMNLDVVMQSSDCPYIVQFYGALFRGGDCWICMELMSTSFDKFY

Parental  KYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIA
          KYVYSV.DDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLD.SGNIKLCDFGISGQLVDSIA
Retrocopy KYVYSV*DDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLD-SGNIKLCDFGISGQLVDSIA

Parental  KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLS
          KTRDAGCRPYMAPERIDPSASRQGYDV.S.VWSLGITLYELATG.FPYPKWNSVFDQL.QVVKGDPPQLS
Retrocopy KTRDAGCRPYMAPERIDPSASRQGYDVHSEVWSLGITLYELATGGFPYPKWNSVFDQLMQVVKGDPPQLS

Parental  NSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERTVEVACYVCKILDQMPATPSSPMYVD
          NSEE..FS.SFINFVNLCLTKDESKRPKYK.LLKHPFILMYEERTVEVACYVCKILDQMP.TPSSPMYVD
Retrocopy NSEECKFSLSFINFVNLCLTKDESKRPKYKDLLKHPFILMYEERTVEVACYVCKILDQMPVTPSSPMYVD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1419 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1419 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000065559	1 retrocopy	retro_hsap_4858,
Monodelphis domestica	ENSMODG00000008266	2 retrocopies	retro_mdom_1281, retro_mdom_957,
Mustela putorius furo	ENSMPUG00000003664	1 retrocopy	retro_mputfur_1419 ,
Pongo abelii	ENSPPYG00000007993	1 retrocopy	retro_pabe_3775,
Tarsius syrichta	ENSTSYG00000011568	1 retrocopy	retro_tsyr_667,