RetrogeneDB ID: retro_mputfur_1350

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897093.1:2002677..2002986(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000004622
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1350
ATGGCCCAGTTTGTCCGTAACCTGGCGGAGAAGGCCCCGGCGCTGGTGAACGCTGCTGTGACTTACTCAAAGCCTTGGAT
TGGCTACATTTTGGCACTATGCCAAAGTTGAGCTTTTCCTCCAACCCCTGCTGAGATCCCTACAGCTATTCAGAGCTTGA
AAACAATAGTCAAGAGTGCTCAAACTGGTAGCTTCAAACAGCTCACAGTTAAGGAAGCTCTGCTGAATGGTTTGGTGGCC
ACCGAGGTGTGGATGTGGTTTTATGTCGGCGAGATCATAGGCAAGCATGGCATCATTGGCTATAATGTT

Alignment

ORF - retro_mputfur_1350 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.24 %
• Parental protein coverage: 85.83 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAQFVRNLAEKAPALVNAAVTYSKP-RLATFWHYAKVELV-PPTPAEIPTAIQSLKKIVKSAQTGSFKQL
          MAQFVRNLAEKAPALVNAAVTYSKP..LATFWHYAKVEL..PPTPAEIPTAIQSLK.IVKSAQTGSFKQL
Retrocopy MAQFVRNLAEKAPALVNAAVTYSKP>GLATFWHYAKVELF<PPTPAEIPTAIQSLKTIVKSAQTGSFKQL

Parental  TVKEALLNGLVATEVWMWFYVGEIIGKHGIIGYNV
          TVKEALLNGLVATEVWMWFYVGEIIGKHGIIGYNV
Retrocopy TVKEALLNGLVATEVWMWFYVGEIIGKHGIIGYNV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1350 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1350 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 44 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000007332	2 retrocopies	retro_btau_105, retro_btau_245,
Callithrix jacchus	ENSCJAG00000013281	1 retrocopy	retro_cjac_283,
Felis catus	ENSFCAG00000011782	4 retrocopies	retro_fcat_1358, retro_fcat_1615, retro_fcat_1941, retro_fcat_371,
Homo sapiens	ENSG00000167283	5 retrocopies	retro_hsap_3029, retro_hsap_3110, retro_hsap_63, retro_hsap_860, retro_hsap_883,
Loxodonta africana	ENSLAFG00000030274	3 retrocopies	retro_lafr_1209, retro_lafr_135, retro_lafr_3,
Macropus eugenii	ENSMEUG00000015281	1 retrocopy	retro_meug_1774,
Myotis lucifugus	ENSMLUG00000014080	3 retrocopies	retro_mluc_2299, retro_mluc_2593, retro_mluc_733,
Macaca mulatta	ENSMMUG00000017604	4 retrocopies	retro_mmul_1333, retro_mmul_22, retro_mmul_25, retro_mmul_262,
Mustela putorius furo	ENSMPUG00000004622	4 retrocopies	retro_mputfur_1036, retro_mputfur_1350 , retro_mputfur_1486, retro_mputfur_966,
Mus musculus	ENSMUSG00000038717	1 retrocopy	retro_mmus_139,
Nomascus leucogenys	ENSNLEG00000007362	6 retrocopies	retro_nleu_425, retro_nleu_608, retro_nleu_765, retro_nleu_81, retro_nleu_841, retro_nleu_846,
Otolemur garnettii	ENSOGAG00000016298	10 retrocopies	retro_ogar_1097, retro_ogar_1102, retro_ogar_176, retro_ogar_3286, retro_ogar_3332, retro_ogar_352, retro_ogar_433, retro_ogar_444, retro_ogar_533, retro_ogar_573,