RetrogeneDB ID: retro_mputfur_1244

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897052.1:3840088..3840624(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MTFR1
• Ensembl ID: ENSMPUG00000009909
• Aliases: None
• Description: mitochondrial fission regulator 1 [Source:HGNC Symbol;Acc:29510]

Sequence

>retro_mputfur_1244
AGCATGCGATCAGTACTGATGCTTTGGTTTGGGAGGCCATATGGTTCATCTCGATGTATCCTAAGTAAAACTGGTACTAA
TTTATCTCGGATGCGGTGTCCAAGAGTTCAGTTTCAGCTTACCGGCCCTACAACAGAATGGAGCCACAATCGTCCAGAAA
AAGATGTAGTGGTATCTTTTGCTGATGTTGGACAGGTAGCCAAAGAAGAAGGAAAGTGTTTAACAAGAGGGCCAACAGGG
TCAGACCAAGGCAACCCCTTCAGGATGACCTTCCTTTCTTTGAGAAGCCTCCAAGCAGGTGATTTTCCTTATCAAACCTG
TCTCTAGAAGACCCTCATCTGAAGATAGCCCTAGCAAATGAGGAAGCATTGCAGAAAATTTGCCCTTGAGAAAGAACTTG
TTGCTCTCAGAACAGCTCAAATTGCCAAAACTGACCCTGCAGGAACAGCAAAATCTCATCGCAATTGATTTAGATTCTGT
CACATCTGTTAACCGCAGCACCACCCTTGGTCCCACCACTTTCCCCATCCCCACCC

Alignment

ORF - retro_mputfur_1244 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.03 %
• Parental protein coverage: 54.13 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  SMQSVL--WSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSPTTEWSPNHLGEDAVVSFADVGWVAKEE
          SM.SVL..W.G.PYGSSR.I..K.GTNLS...CPRVQFQLT.PTTEWS.N....D.VVSFADVG.VAKEE
Retrocopy SMRSVLMLWFGRPYGSSRCILSKTGTNLSRMRCPRVQFQLTGPTTEWSHNRPEKDVVVSFADVGQVAKEE

Parental  GECSTRQRT-EVRSRQPLQDDLPFFEKPPSRQFSLPNLSPEDPQQKTALANEEALQKICALENE-LAALR
          G.C.TR..T..VR.RQPLQDDLPFFEKPPSR.FSL.NLS.EDP..K.ALANEEALQKIC..E....A...
Retrocopy GKCLTRGPT<RVRPRQPLQDDLPFFEKPPSR*FSLSNLSLEDPHLKIALANEEALQKICP*ERT>VALRT

Parental  AQIA-KIVTLQEQQNLITGDLEPATSV-TTPPSSIPPPPPPPP
          AQIA.K......Q.NLI..DL...TSV.T..P...PP..P.PP
Retrocopy AQIA>KLTLQEQQ-NLIAIDLDSVTSV>TAAPPLVPPLSPSPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1244 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1244 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000012281	1 retrocopy	retro_amel_1640,
Choloepus hoffmanni	ENSCHOG00000006664	3 retrocopies	retro_chof_1268, retro_chof_2700, retro_chof_483,
Dipodomys ordii	ENSDORG00000016322	1 retrocopy	retro_dord_293,
Homo sapiens	ENSG00000066855	1 retrocopy	retro_hsap_4849,
Macaca mulatta	ENSMMUG00000011263	1 retrocopy	retro_mmul_2590,
Mustela putorius furo	ENSMPUG00000009909	2 retrocopies	retro_mputfur_1244 , retro_mputfur_894,
Oryctolagus cuniculus	ENSOCUG00000008165	1 retrocopy	retro_ocun_1594,
Pongo abelii	ENSPPYG00000018631	1 retrocopy	retro_pabe_3769,
Rattus norvegicus	ENSRNOG00000021359	1 retrocopy	retro_rnor_1821,
Tarsius syrichta	ENSTSYG00000010102	1 retrocopy	retro_tsyr_1899,