RetrogeneDB ID: retro_mputfur_1231

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897048.1:489036..489884(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PRR11
• Ensembl ID: ENSMPUG00000015240
• Aliases: None
• Description: proline rich 11 [Source:HGNC Symbol;Acc:25619]

Sequence

>retro_mputfur_1231
AGAGTGTGGTCTATATACAACTGGTGCCAGAACTGCATGGCCCAGAATTCAGAAGTCTTGAGAGACATCATCTCTCCATC
CTATTATTGCCACCAAAAACTTAACAGTCTAAAACAACAGTTTCACATTTTGGCAAGTGAATTCTGCAGACTCTGGGAGG
CACTGAAGACCATCCTGGAGGACTCGTCCTTGTCCAAGTTGTGGTCAAATGGGTCACACAAGTGGTAAATTTACAAATGT
GCCTGCCTGTGTTCTAACCATCCCTGGAGAATCCCCAGCTGGACTTCCTCCCATACTGCCACAGCCAGCTACCCACCTTC
CTCCTCATCCATCTCTGCCTCCGCTCCCCCTGCCTCCTCTCTGCCTGTACTCCATCACCTGTGGCACCTGGGCTGCTCAG
AAATTCTGACTGTACTAAAGAACATCAGAATGGACCATTAAAAACAAGATGGATCCATGCAGATAATAGTTAAAGATCTA
CTGTCTGAAATGAAAGAACACACGGTTTTGATGAAGAAATTTGTATCATCACCAGAGGCACAGCATTCACTAGTTACAGT
CTCTGACCTGCGGTGTGTTATCCTGAAACCCAGCCCCAAATTGTTACCACTTGACTTCCGCATGTCTTAATTACTCCTGG
TAAAAGCCAGATGGATCTGCGGAAACTACTTAGAAAAGTCAATGTTAAGAGGATCACAGGGGGAGCCCCACTTACCAATA
AAGAAAATATGGAAACAGGAACTAGGCTGACTCCAGTGATGACCTCGAGGAGAAAGTTTCAGCACAGTCAGCCTGGAAGT
CCGACTCAAACCCTGCCACTTTCTACAAGCAGCTTTGTTGAACAAAAC

Alignment

ORF - retro_mputfur_1231 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.82 %
• Parental protein coverage: 78.75 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  RVWSIYNWCQNCMAQSLEVLKDTIFPSRFCRRELHSLKERFCILESELCKLQETLKTVLENSS-CPSCGQ
          RVWSIYNWCQNCMAQ..EVL.D.I.PS..C...L.SLK..F.IL.SE.C.L.E.LKT.LE.SS.CPSCGQ
Retrocopy RVWSIYNWCQNCMAQNSEVLRDIISPSYYCHQKLNSLKQQFHILASEFCRLWEALKTILEDSS>CPSCGQ

Parental  TCHISGKLKNVPARVLNTPGESRAILPPTLPQPVTPTPALLPPPPPPPPPPPL-PPPPPPTAPVLLRKSD
          ..H.SGK..NVPA.VL..PGES.A.LPP.LPQP.T..P....P..PP.P.PPL....P.P.AP.LLR.SD
Retrocopy MGHTSGKFTNVPACVLTIPGESPAGLPPILPQPATHLPP--HPSLPPLPLPPL>ACTPSPVAPGLLRNSD

Parental  RTKALQAGPLK-RDGPMQITVKDLLTVKLKKTQCFDERKKLIPSPKAQNPLVTVSDLQRVTLKPNSKVL-
          .TK..Q.GPLK..DG.MQI.VKDLL......T......KK...SP.AQ..LVTVSDL..V.LKP..K.L.
Retrocopy CTKEHQNGPLK>QDGSMQIIVKDLLSEMKEHTVLM---KKFVSSPEAQHSLVTVSDLRCVILKPSPKLL<

Parental  STRVTNVLITPGKSQIDLRKLLRKVDVERSPGGTPLTNKENMDTGTGLTPVMTRALRRKFQMAHPRSPTQ
          .T....VLITPGKSQ.DLRKLLRKV.V.R..GG.PLTNKENM.TGT.LTPVMT...RRKFQ...P.SPTQ
Retrocopy TT*LPHVLITPGKSQMDLRKLLRKVNVKRITGGAPLTNKENMETGTRLTPVMTS--RRKFQHSQPGSPTQ

Parental  TLPLSTSSFDEQN
          TLPLSTSSF.EQN
Retrocopy TLPLSTSSFVEQN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1231 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1231 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000012284	2 retrocopies	retro_chof_1813, retro_chof_294,
Mustela putorius furo	ENSMPUG00000015240	1 retrocopy	retro_mputfur_1231 ,
Otolemur garnettii	ENSOGAG00000005839	1 retrocopy	retro_ogar_414,