RetrogeneDB ID: retro_mputfur_1092

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897012.1:5848558..5848964(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UBE2L6
• Ensembl ID: ENSMPUG00000000263
• Aliases: None
• Description: ubiquitin-conjugating enzyme E2L 6 [Source:HGNC Symbol;Acc:12490]

Sequence

>retro_mputfur_1092
GATCTTCAGGCAAAACTTCTCTCCTATCTGTGGACCTCCTCAGCAACAGTGCCTACATCCTCATATGACATTTACTCCTC
CTGCCTGAGAAAATGCCCTCCAAACTCAAGAACTCCAATGTACATATCAATATCCCAGAGGACTTTCTGTTCAAACCCCC
TCAGTGACATTCACAAGCAGGATCTACCACCCTCATGTGGGCAATAAGAGAGAGGTTTGCCTGTCCATCATCAGCAATGA
TAACTGGAAGCCTTACAGCAAGACCAGCCACGTCTTAGAGGCCCTCAGTGGAGTAGTGAATAAATCAGACCTGGGACAGT
CCATTTGGGTGAAACTCACTGATCTGTTGACCTAAGAACCAGAGCTGTTCAACAGTGAGGTTAGAGAGCTCACCTTTAAG
TATGGA

Alignment

ORF - retro_mputfur_1092 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.25 %
• Parental protein coverage: 91.89 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  DLQAELPPYLR-NLFIDDADVLVWHVLLLPEEPPYNLKAFHVRISFPKDYPFKPP-TVTFTTRIYHPNVG
          DLQA.L..YL...L....A..L..H.LLLPE..P..LK...V.I..P.D..FKPP..VTFT.RIYHP.VG
Retrocopy DLQAKLLSYLW<DLLSNSAYILI*HLLLLPEKMPSKLKNSNVHINIPEDFLFKPP<SVTFTSRIYHPHVG

Parental  HDGSVCLPIISRENWQPHTKTSQVLEALSVLVNRPDLGQPIRLELADLLAENPERFNSEAREFTLKYG
          ....VCL.IIS..NW.P..KTS.VLEALS..VN..DLGQ.I...L.DLL...PE.FNSE.RE.T.KYG
Retrocopy NKREVCLSIISNDNWKPYSKTSHVLEALSGVVNKSDLGQSIWVKLTDLLT*EPELFNSEVRELTFKYG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1092 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1092 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000014519	1 retrocopy	retro_amel_1385,
Choloepus hoffmanni	ENSCHOG00000001515	1 retrocopy	retro_chof_1084,
Microcebus murinus	ENSMICG00000004882	1 retrocopy	retro_mmur_1295,
Mustela putorius furo	ENSMPUG00000000263	1 retrocopy	retro_mputfur_1092 ,
Mustela putorius furo	ENSMPUG00000009110	5 retrocopies	retro_mputfur_1263, retro_mputfur_1637, retro_mputfur_263, retro_mputfur_682, retro_mputfur_703,