RetrogeneDB ID: retro_mmur_992

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_152178:93..669(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNF114
• Ensembl ID: ENSMICG00000011155
• Aliases: None
• Description: ring finger protein 114 [Source:HGNC Symbol;Acc:13094]

Sequence

>retro_mmur_992
TATAGAGAAGCGGGGCGGGTTCTCTGTGAGCATGTCTTTTGCTCTGCATATCTGCAGGAATGTCAAAATTGAAGAAACCT
GTTTGTGTGATGTGTCCTAGTGCTCTGGCAACTGACAGCGGAGCTGAGTAGCTACAGGGGCAGATGGAGGGCACAGAGAC
TTCTTGCCATGGCTGCTGGAAGAATTTGTTCCTATCCAAGCTTTGGGCCCACGTGGCTACCTAGTCCAAATGCCAGAATT
GCATCGTGGAAGGTGTGAATGCCACCAATCAGGGTAATTTCCTTAAGCCCAGGAAATGTCCCAAACCATTACACCTTTCC
TTGACCTTACTTTACCAAGGAGAACTTTGATCAGGAAGAACTTGTTAACACTGCAAATTATCTCCTAAGATGGAAACCAA
ACTTGTGGTTTGTCCAATATGTGCCTTGATTCCCCAGGGAGACCCCCAACTACTGCAGTGCCAACTTTATAGAGCACATC
CAGAACTGGCACCAGTTTTATTAAGACACTTTTCTGGATTGTGATGCTGATGATGTGATGAATGACATGGTGTTGTAGAA
CTCCATCATCCATCAG

Alignment

ORF - retro_mmur_992 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.35 %
• Parental protein coverage: 84.65 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  YEKPVQVPCGHVFCSACLQECL-KPKKPVCGVCRSALAPGVRAMELERQIESTETSCHGCRKNXXXXXXX
          Y.....V.C.HVFCSA.LQEC..K.KKPVC..C.SALA....A..L..Q.E.TETSCHGC.KN.......
Retrocopy YREAGRVLCEHVFCSAYLQECQ<KLKKPVCVMCPSALATDSGAE*LQGQMEGTETSCHGCWKNLFLSKLW

Parental  XXXXXXFQYQNYIMEGVKATTKDASLQPR-NVPNRYTFPCPYCPEKNFDQEGLVE-HCKLSHSTDTKSVV
          .........QN.I.EGV.AT.....L.PR.NVPN.YTFP.PY....NFDQE.LV..HCKLS....TK.VV
Retrocopy AHVAT*SKCQNCIVEGVNATNQGNFLKPR>NVPNHYTFP*PYFTKENFDQEELVN<HCKLSPKMETKLVV

Parental  CPICASMPWGD-PNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSIIDQ
          CPICA..P.GD.PNY.SANFIEHIQ..HQF..DTF.D.D.D...M...VL..SII.Q
Retrocopy CPICALIPQGD>PNYCSANFIEHIQNWHQFY*DTFLDCDADDV-MNDMVL*NSIIHQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_992 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_992 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000009113	2 retrocopies	retro_dnov_1534, retro_dnov_1557,
Microcebus murinus	ENSMICG00000011155	1 retrocopy	retro_mmur_992 ,
Otolemur garnettii	ENSOGAG00000003953	3 retrocopies	retro_ogar_1149, retro_ogar_2158, retro_ogar_2330,
Ochotona princeps	ENSOPRG00000004732	2 retrocopies	retro_opri_368, retro_opri_709,
Pteropus vampyrus	ENSPVAG00000004117	4 retrocopies	retro_pvam_1136, retro_pvam_1148, retro_pvam_1149, retro_pvam_1477,
Sarcophilus harrisii	ENSSHAG00000001827	1 retrocopy	retro_shar_193,